Index (com.agenarisk.api 1.028 API)

A B C D E F G H I J K L M N O P Q R S T U V W X Y
All Classes and Interfaces|All Packages|Constant Field Values|Serialized Form

A

absorb(JSONObject) - Method in class com.agenarisk.api.model.Model: Creates all the Model structure from the provided JSONObject.
action - Enum constant in enum com.agenarisk.api.model.Network.ModificationLog
active - Enum constant in enum com.agenarisk.api.model.DataSet.Field
AdapterException - Exception in com.agenarisk.api.exception
AdapterException(String) - Constructor for exception com.agenarisk.api.exception.AdapterException
AdapterException(String, Throwable) - Constructor for exception com.agenarisk.api.exception.AdapterException
addLink(Link) - Method in class com.agenarisk.api.model.Node: Removes the Link object from the linksOut list.
addMessage(Advisory.AdvisoryMessage) - Method in class com.agenarisk.api.util.Advisory.AdvisoryGroup: Adds an AdvisoryMessage to this AdvisoryGroup.
addMessageIfLinked(String) - Static method in class com.agenarisk.api.util.Advisory: Returns true if Thread.currentThread() is linked to an AdvisoryGroup (also creates AdvisoryMessage and adds it to that group).
Otherwise returns false.
addRocAuc(String, double) - Method in class com.agenarisk.learning.structure.result.PerformanceEvaluation
addRocCurve(String, List<double[]>) - Method in class com.agenarisk.learning.structure.result.PerformanceEvaluation
Advisory - Class in com.agenarisk.api.util: Advisory class allows to recover in recoverable situations and compile advisory messages instead of throwing exceptions.
Basic scenario: when loading a model in AgenaRisk Desktop, we'd rather load even invalid node tables and let the user sort them out, than to fail model load with an error.
Advisory class is thread-safe.
Advisory() - Constructor for class com.agenarisk.api.util.Advisory
Advisory.AdvisoryGroup - Class in com.agenarisk.api.util: AdvisoryGroup instance is associated with a number of Threads and is abstractly associated with some particular job (which is potentially multi-threaded).
AdvisoryGroup class is thread-safe.
Advisory.AdvisoryMessage - Class in com.agenarisk.api.util: AdvisoryMessage is an abstraction of a message with a possible Throwable cause.
AdvisoryGroup(Object) - Constructor for class com.agenarisk.api.util.Advisory.AdvisoryGroup
AdvisoryMessage(String) - Constructor for class com.agenarisk.api.util.Advisory.AdvisoryMessage: Constructor for AdvisoryMessage.
AdvisoryMessage(String, Throwable) - Constructor for class com.agenarisk.api.util.Advisory.AdvisoryMessage: Constructor for AdvisoryMessage.
AgenaRiskException - Exception in com.agenarisk.api.exception
AgenaRiskException(String) - Constructor for exception com.agenarisk.api.exception.AgenaRiskException
AgenaRiskException(String, Throwable) - Constructor for exception com.agenarisk.api.exception.AgenaRiskException
AgenaRiskException(Throwable) - Constructor for exception com.agenarisk.api.exception.AgenaRiskException
AgenaRiskRuntimeException - Exception in com.agenarisk.api.exception
AgenaRiskRuntimeException(String) - Constructor for exception com.agenarisk.api.exception.AgenaRiskRuntimeException
AgenaRiskRuntimeException(String, Throwable) - Constructor for exception com.agenarisk.api.exception.AgenaRiskRuntimeException
agenariskVersion - Enum constant in enum com.agenarisk.api.io.stub.Audit.Field
answer - Enum constant in enum com.agenarisk.api.io.stub.RiskTable.Answer
answers - Enum constant in enum com.agenarisk.api.io.stub.RiskTable.Answer
ApplicableConfigurer<T extends Configurer> - Class in com.agenarisk.learning.structure.config
ApplicableConfigurer() - Constructor for class com.agenarisk.learning.structure.config.ApplicableConfigurer
ApplicableConfigurer(Config) - Constructor for class com.agenarisk.learning.structure.config.ApplicableConfigurer
apply() - Method in class com.agenarisk.learning.structure.config.AveragingConfigurer
apply() - Method in interface com.agenarisk.learning.structure.config.Configurable
apply() - Method in class com.agenarisk.learning.structure.config.EvaluationConfigurer: Finalize configuration and proceed to execution preparation
apply() - Method in class com.agenarisk.learning.structure.config.GenerationConfigurer
apply() - Method in class com.agenarisk.learning.structure.config.GesConfigurer: Finalize configuration and proceed to execution preparation
apply() - Method in class com.agenarisk.learning.structure.config.HcConfigurer: Finalize configuration and proceed to execution preparation
apply() - Method in class com.agenarisk.learning.structure.config.MahcConfigurer: Finalize configuration and proceed to execution preparation
apply() - Method in class com.agenarisk.learning.structure.config.MergerConfigurer
apply() - Method in class com.agenarisk.learning.structure.config.PerformanceEvaluationConfigurer
apply() - Method in class com.agenarisk.learning.structure.config.SaiyanHConfigurer: Finalize configuration and proceed to execution preparation
apply() - Method in class com.agenarisk.learning.structure.config.TableLearningConfigurer
apply() - Method in class com.agenarisk.learning.structure.config.TabuConfigurer: Finalize configuration and proceed to execution preparation
applyKnowledge() - Method in class com.agenarisk.learning.structure.config.KnowledgeConfigurer
audit - Enum constant in enum com.agenarisk.api.io.stub.Audit.Field
Audit - Class in com.agenarisk.api.io.stub: This is a stub class that only contains field values for input/output to XML and JSON format.
Audit() - Constructor for class com.agenarisk.api.io.stub.Audit
Audit.Field - Enum in com.agenarisk.api.io.stub: This is set of fields for input/output to XML and JSON format
averaging - Enum constant in enum com.agenarisk.learning.structure.execution.ConfiguredExecutor.Stage
AveragingConfigurer - Class in com.agenarisk.learning.structure.config
AveragingConfigurer() - Constructor for class com.agenarisk.learning.structure.config.AveragingConfigurer
AveragingConfigurer(Config) - Constructor for class com.agenarisk.learning.structure.config.AveragingConfigurer
AveragingExecutor - Class in com.agenarisk.learning.structure.config
AveragingExecutor() - Constructor for class com.agenarisk.learning.structure.config.AveragingExecutor
AveragingExecutor(Config) - Constructor for class com.agenarisk.learning.structure.config.AveragingExecutor

B

BicLogConfigurer<T extends Configurer> - Class in com.agenarisk.learning.structure.config
BicLogConfigurer() - Constructor for class com.agenarisk.learning.structure.config.BicLogConfigurer
BicLogConfigurer(Config) - Constructor for class com.agenarisk.learning.structure.config.BicLogConfigurer
Boolean - Enum constant in enum com.agenarisk.api.model.Node.Type
buildResponseCurveGraphs() - Method in class com.agenarisk.api.tools.SensitivityAnalyser: Compiles data for response curve graphs.
Only allowed when target node is Numeric Interval.
A graph is generated for each sensitivity node and selected summary statistic.
Will clip data points outside of lower and upper sensitivity percentile values.
X axis is sensitivity node states.
Y axis is summary statistic values.
buildTables() - Method in class com.agenarisk.api.tools.SensitivityAnalyser: Compiles Sensitivity Analysis data as tables.
A table is generated for each sensitivity node.
Row per sensitivity state.
Column per summary statistic (if the target node is numeric continuous) or target state (if the target node is discrete).
First item in a row is a sensitivity state.
Positive infinity will appear as "Infinity", negative infinity as "-Infinity" and Double.NaN as "NaN", all wrapped in quotes.
buildTornadoGraphs() - Method in class com.agenarisk.api.tools.SensitivityAnalyser: Compiles Sensitivity Analysis data as tornado graphs.
Graphs are created for each selected summary statistic.

C

CACHE_NPTS - Static variable in class com.agenarisk.api.io.JSONAdapter
calculate() - Method in class com.agenarisk.api.model.Model: Triggers propagation in this Model for all Networks and DataSets.
calculate(Collection<Network>, Collection<DataSet>, Model.CalculationFlag...) - Method in class com.agenarisk.api.model.Model: Triggers propagation in this model for provided Networks and DataSets.
If either is null, all Networks or DataSets will be used instead.
CALCULATE_LOGPE - Enum constant in enum com.agenarisk.api.model.Model.CalculationFlag: Along with calculating marginals, log probability of evidence will also be calculated (incurs additional calculation time)
calculateBrierScore(String, Map<String, Double>) - Static method in class com.agenarisk.learning.structure.config.PerformanceEvaluationExecutor: Calculates the Brier score for a single multiclass prediction.
calculateSphericalScore(String, Map<String, Double>) - Static method in class com.agenarisk.learning.structure.config.PerformanceEvaluationExecutor: Calculates the Spherical score for a single multiclass probabilistic prediction.
CalculationException - Exception in com.agenarisk.api.exception: Thrown when a calculation fails.
CalculationException(String) - Constructor for exception com.agenarisk.api.exception.CalculationException
CalculationException(String, Throwable) - Constructor for exception com.agenarisk.api.exception.CalculationException
CalculationException(Throwable) - Constructor for exception com.agenarisk.api.exception.CalculationException
CalculationResult - Class in com.agenarisk.api.model: CalculationResult class represents a view of the Node's calculation results.
CalculationResult.Field - Enum in com.agenarisk.api.model: This is set of fields for input/output to XML and JSON format
Calculator - Class in com.agenarisk.api.tools.calculator: This class is for CLI API interface to enable calculations without using the Java API and relying on CLI invocation only
Calculator() - Constructor for class com.agenarisk.api.tools.calculator.Calculator
CalculatorException - Exception in com.agenarisk.api.tools.calculator
CalculatorException() - Constructor for exception com.agenarisk.api.tools.calculator.CalculatorException
CalculatorException(String) - Constructor for exception com.agenarisk.api.tools.calculator.CalculatorException
CalculatorException(String, Throwable) - Constructor for exception com.agenarisk.api.tools.calculator.CalculatorException
CalculatorException(Throwable) - Constructor for exception com.agenarisk.api.tools.calculator.CalculatorException
canvas - Enum constant in enum com.agenarisk.api.io.stub.Graphics.CanvasData
canvasData - Enum constant in enum com.agenarisk.api.io.stub.Graphics.CanvasData
cell - Enum constant in enum com.agenarisk.api.model.NodeConfiguration.Table
change - Enum constant in enum com.agenarisk.api.io.stub.Audit.Field
changeContainedId(I, String) - Method in interface com.agenarisk.api.model.interfaces.IdContainer: Deprecated.
For internal use only. You will break referential integrity by using this method directly.
changelog - Enum constant in enum com.agenarisk.api.io.stub.Audit.Field
child - Enum constant in enum com.agenarisk.api.model.Link.Field
cleanup(Config) - Static method in class com.agenarisk.api.util.TempFileCleanup: Deletes all registered temporary files for the given config and clears the registry for that config.
clearAllData() - Method in class com.agenarisk.api.model.DataSet: Clears Observations, VariableObservations and CalculationResults data from this DataSet.
clearObservation(Node) - Method in class com.agenarisk.api.model.DataSet: Clears an observation from a Node if it exists.
clearObservations() - Method in class com.agenarisk.api.model.DataSet: Clears all non-variable observations from this DataSet for all Networks and Nodes
clearVariableObservation(Node, String) - Method in class com.agenarisk.api.model.DataSet: Clears the VariableObservation of the provided name in this DataSet for the provided Node.
clearVariableObservations() - Method in class com.agenarisk.api.model.DataSet: Clears all VariableObservations from this DataSet for all Networks and Nodes.
clearVariableObservations(Node) - Method in class com.agenarisk.api.model.DataSet: Clears all VariableObservations from this DataSet for the provided Node.
CLOUD_DATASET - Enum constant in enum com.agenarisk.api.model.Model.ExportFlag: Will copy the first DataSet with observations only to the root of the JSON structure so it can be submitted to AgenaRisk Cloud
CmpxStructureExtractor - Class in com.agenarisk.learning.structure.utility
CmpxStructureExtractor() - Constructor for class com.agenarisk.learning.structure.utility.CmpxStructureExtractor
column - Enum constant in enum com.agenarisk.api.model.NodeConfiguration.Table
com.agenarisk.api.exception - package com.agenarisk.api.exception
com.agenarisk.api.io - package com.agenarisk.api.io
com.agenarisk.api.io.stub - package com.agenarisk.api.io.stub
com.agenarisk.api.model - package com.agenarisk.api.model
com.agenarisk.api.model.field - package com.agenarisk.api.model.field
com.agenarisk.api.model.interfaces - package com.agenarisk.api.model.interfaces
com.agenarisk.api.tools - package com.agenarisk.api.tools
com.agenarisk.api.tools.calculator - package com.agenarisk.api.tools.calculator
com.agenarisk.api.tools.learning.structure - package com.agenarisk.api.tools.learning.structure
com.agenarisk.api.tools.sensitivity - package com.agenarisk.api.tools.sensitivity
com.agenarisk.api.util - package com.agenarisk.api.util
com.agenarisk.learning.structure - package com.agenarisk.learning.structure
com.agenarisk.learning.structure.config - package com.agenarisk.learning.structure.config
com.agenarisk.learning.structure.execution - package com.agenarisk.learning.structure.execution
com.agenarisk.learning.structure.result - package com.agenarisk.learning.structure.result
com.agenarisk.learning.structure.utility - package com.agenarisk.learning.structure.utility
comment - Enum constant in enum com.agenarisk.api.io.stub.Audit.Field
compareTo(Id) - Method in class com.agenarisk.api.model.field.Id: Compares two ID objects by first using case-insensitive String comparison of their respective values.
compareTo(Link) - Method in class com.agenarisk.api.model.Link: Compares this Link object to another based on its underlying logic network and node IDs.
compareTo(Network) - Method in class com.agenarisk.api.model.Network: Compares this Network object to another based on the Id of this object.
compareTo(Node) - Method in class com.agenarisk.api.model.Node: Compares this Node object to another based on the Id of this object.
compileAdvisoryMessages(Advisory.AdvisoryGroup) - Static method in class com.agenarisk.api.util.Advisory: Compiles a list of AdvisoryMessage texts, including messages of any Throwable causes of those AdvisoryMessages, for the provided AdvisoryGroup.
compileAdvisoryMessagesForCurrentThreadGroup() - Static method in class com.agenarisk.api.util.Advisory: Compiles a list of AdvisoryMessage texts, including messages of any Throwable causes of those AdvisoryMessages, for the AdvisoryGroup linked to Thread.currentThread().
computeLabel(ExtendedNode, ExtendedState) - Static method in class com.agenarisk.api.model.State: Computes a label for a logical state.
confidenceInterval - Enum constant in enum com.agenarisk.api.io.stub.SummaryStatistic.Field
config - Variable in class com.agenarisk.learning.structure.config.Configurer
Configurable<T extends Configurer> - Interface in com.agenarisk.learning.structure.config
ConfigurableFromJson<T extends Configurer> - Interface in com.agenarisk.learning.structure.config
configuration - Enum constant in enum com.agenarisk.api.model.NodeConfiguration.Field
configureBicLogFromJson(JSONObject) - Method in class com.agenarisk.learning.structure.config.BicLogConfigurer
ConfiguredExecutor - Class in com.agenarisk.learning.structure.execution
ConfiguredExecutor() - Constructor for class com.agenarisk.learning.structure.execution.ConfiguredExecutor
ConfiguredExecutor(Config) - Constructor for class com.agenarisk.learning.structure.execution.ConfiguredExecutor
ConfiguredExecutor.Stage - Enum in com.agenarisk.learning.structure.execution
configureFromJson(JSONObject) - Method in class com.agenarisk.learning.structure.config.AveragingConfigurer
configureFromJson(JSONObject) - Method in interface com.agenarisk.learning.structure.config.ConfigurableFromJson
configureFromJson(JSONObject) - Method in class com.agenarisk.learning.structure.config.EvaluationConfigurer
configureFromJson(JSONObject) - Method in class com.agenarisk.learning.structure.config.GenerationConfigurer
configureFromJson(JSONObject) - Method in class com.agenarisk.learning.structure.config.GesConfigurer
configureFromJson(JSONObject) - Method in class com.agenarisk.learning.structure.config.HcConfigurer
configureFromJson(JSONObject) - Method in class com.agenarisk.learning.structure.config.KnowledgeConfigurer
configureFromJson(JSONObject) - Method in class com.agenarisk.learning.structure.config.MahcConfigurer
configureFromJson(JSONObject) - Method in class com.agenarisk.learning.structure.config.PerformanceEvaluationConfigurer
configureFromJson(JSONObject) - Method in class com.agenarisk.learning.structure.config.SaiyanHConfigurer
configureFromJson(JSONObject) - Method in class com.agenarisk.learning.structure.config.TableLearningConfigurer
configureFromJson(JSONObject) - Method in class com.agenarisk.learning.structure.config.TabuConfigurer
configurePruningFromJson(JSONObject) - Method in class com.agenarisk.learning.structure.config.PrunableLearningConfigurer
Configurer<T extends Configurer> - Class in com.agenarisk.learning.structure.config
Configurer() - Constructor for class com.agenarisk.learning.structure.config.Configurer
Configurer(Config) - Constructor for class com.agenarisk.learning.structure.config.Configurer
constant - Enum constant in enum com.agenarisk.api.io.stub.RiskTable.QuestionType
constantName - Enum constant in enum com.agenarisk.api.io.stub.RiskTable.Question
constantName - Enum constant in enum com.agenarisk.api.model.Observation.Field
content - Enum constant in enum com.agenarisk.api.io.stub.Text.Field
ContinuousInterval - Enum constant in enum com.agenarisk.api.model.Node.Type
convergence - Enum constant in enum com.agenarisk.api.model.Settings.Field
convertTo2DArray(JSONObject, String, String) - Static method in class com.agenarisk.api.util.JSONUtils: Converts an array of mixed objects into a 2D JSONArray.
convertToJSONArray(JSONObject, String, String) - Static method in class com.agenarisk.api.util.JSONUtils: Omits the key `childKey` and puts its contents directly under the `parentKey` as a JSONArray.
convertToSimulated() - Method in class com.agenarisk.api.model.Node: Enables calculation simulation for the Node (only possible for ContinuousInterval or IntegerInterval nodes).
convertToStatic(DataSet) - Method in class com.agenarisk.api.model.Node: Disables simulation and converts dynamic states from the results of the provided DataSet into static permanent states.
Any VariableObservations in the DataSet will replace current Node variable defaults and will be replaced from the DataSet observations.
convertToStatic(DataSet, Model.ConversionFlag...) - Method in class com.agenarisk.api.model.Model: Make all states of dynamically discretized nodes static as they currently are in the provided DataSet.
No action will be performed if no nodes are simulated.
Any VariableObservations in the DataSet will replace current Node variable defaults and will be replaced from the DataSet observations.
create(List<List<String>>, String, String) - Static method in class com.agenarisk.learning.structure.utility.ModelFromCsvCreator
createCrossNetworkLink(Node, Node, CrossNetworkLink.Type, String) - Static method in class com.agenarisk.api.model.CrossNetworkLink: Factory method to create a CrossNetworkLink instance.
createDataSet(Model, String) - Static method in class com.agenarisk.api.model.DataSet: Factory method to create a DataSet and add it to the given Model.
createDataSet(Model, JSONObject) - Static method in class com.agenarisk.api.model.DataSet: Creates a DataSet for the Model from JSON data.
createDataSet(String) - Method in class com.agenarisk.api.model.Model: Creates a new DataSet and adds it to this Model.
createDataSet(JSONObject) - Method in class com.agenarisk.api.model.Model: Creates a DataSet for this Model from JSON data.
createLink(Node, Node) - Static method in class com.agenarisk.api.model.Link: Creates a Link object without manipulating the nodes themselves.
createLink(Node, Node, CrossNetworkLink.Type) - Method in class com.agenarisk.api.model.Model: Creates a Link between two nodes in same or different Networks.
createLink(Node, Node, State) - Method in class com.agenarisk.api.model.Model: Creates a CrossNetworkLink of type CrossNetworkLink.Type.State that passes the given state from source Node to target Node.
createLink(String, String, String, String, CrossNetworkLink.Type) - Method in class com.agenarisk.api.model.Model: Creates a CrossNetworkLink of given Type.
createLink(String, String, String, String, String) - Method in class com.agenarisk.api.model.Model: Creates a CrossNetworkLink of type CrossNetworkLink.Type.State that passes the given state from source Node to target Node.
createLogicLink() - Method in class com.agenarisk.api.model.CrossNetworkLink: This will create a link in the underlying logic.
createLogicLink() - Method in class com.agenarisk.api.model.Link: This will create a link in the underlying logic.
createMissingAttrMessage(JSONException) - Static method in class com.agenarisk.api.util.JSONUtils: This is a helper function to create a message for a JSONException that is formatted as suitable for display to a user.
createModel() - Static method in class com.agenarisk.api.model.Model: Factory method to create an empty instance of a Model class.
createModel(JSONObject) - Static method in class com.agenarisk.api.model.Model: Factory method to create an instance of a Model from provided JSONObject.
createModel(Model) - Static method in class com.agenarisk.api.model.Model: Creates a Model from a Minerva Model object.
createNetwork(Model, String, String) - Static method in class com.agenarisk.api.model.Network: Factory method to be called by a Model object that is trying to add a Network to itself.
createNetwork(Model, JSONObject) - Static method in class com.agenarisk.api.model.Network: Factory method to be called by a Model object that is trying to add a Network to itself.
createNetwork(Model, JSONObject, boolean) - Static method in class com.agenarisk.api.model.Network: Factory method to be called by a Model object that is trying to add a Network to itself.
createNetwork(String) - Method in class com.agenarisk.api.model.Model: Creates a new empty Network and adds it to this Model.
createNetwork(String, String) - Method in class com.agenarisk.api.model.Model: Creates a new empty Network and adds it to this Model.
createNetwork(JSONObject) - Method in class com.agenarisk.api.model.Model: Creates a Network and adds it to this Model.
createNetwork(JSONObject, boolean) - Method in class com.agenarisk.api.model.Model: Creates a Network and adds it to this Model.
createNode(Network, String, String, Node.Type) - Static method in class com.agenarisk.api.model.Node: Factory method to be called by a Network object that is trying to add a Node to itself.
createNode(Network, JSONObject) - Static method in class com.agenarisk.api.model.Node: Factory method to create a Node for use by the Network class.
createNode(Network, JSONObject, boolean) - Static method in class com.agenarisk.api.model.Node: Factory method to create a Node for use by the Network class.
createNode(String, Node.Type) - Method in class com.agenarisk.api.model.Network: Creates a Node and adds it to this Network.
createNode(String, String, Node.Type) - Method in class com.agenarisk.api.model.Network: Creates a Node and adds it to this Network.
createNode(JSONObject) - Method in class com.agenarisk.api.model.Network: Creates a Node from its JSONObject specification and adds it to this Network.
createNode(JSONObject, boolean) - Method in class com.agenarisk.api.model.Network: Creates a Node from its JSONObject specification and adds it to this Network.
createState(Node, String) - Static method in class com.agenarisk.api.model.State: Creates a State instance for the given Node with the given Label.
createTemplate(Node.Type) - Static method in class com.agenarisk.api.model.NodeTemplate
createVariable(String, double) - Method in class com.agenarisk.api.model.Node: Creates a new node Variable.
CrossNetworkLink - Class in com.agenarisk.api.model: CrossNetworkLink represents a link between Nodes in different Networks.
CrossNetworkLink.Field - Enum in com.agenarisk.api.model: This is set of fields for input/output to XML and JSON format
CrossNetworkLink.Type - Enum in com.agenarisk.api.model: Possible types of data that the Link will pass
CsvReader - Class in com.agenarisk.api.util
CsvReader() - Constructor for class com.agenarisk.api.util.CsvReader
CsvWriter - Class in com.agenarisk.api.util
CsvWriter() - Constructor for class com.agenarisk.api.util.CsvWriter
customPercentiles - Enum constant in enum com.agenarisk.api.model.NodeConfiguration.Percentiles

D

data - Enum constant in enum com.agenarisk.api.io.stub.Graphics.Images
data - Enum constant in enum com.agenarisk.api.io.stub.Picture.Field
dataSet - Enum constant in enum com.agenarisk.api.model.DataSet.Field
DataSet - Class in com.agenarisk.api.model: DataSet class represents an equivalent to a Scenario in AgenaRisk Desktop or Scenario in AgenaRisk Java API v1.
DataSet.Field - Enum in com.agenarisk.api.model: This is set of fields for input/output to XML and JSON format
DataSetException - Exception in com.agenarisk.api.exception
DataSetException(String) - Constructor for exception com.agenarisk.api.exception.DataSetException
DataSetException(String, Throwable) - Constructor for exception com.agenarisk.api.exception.DataSetException
dataSets - Enum constant in enum com.agenarisk.api.model.DataSet.Field
dateTime - Enum constant in enum com.agenarisk.api.io.stub.Audit.Field
description - Enum constant in enum com.agenarisk.api.io.stub.RiskTable.Question
description - Enum constant in enum com.agenarisk.api.io.stub.RiskTable.Questionnaire
description - Enum constant in enum com.agenarisk.api.model.Network.Field
description - Enum constant in enum com.agenarisk.api.model.Network.ModificationLog
description - Enum constant in enum com.agenarisk.api.model.Node.Field
destroy(Advisory.AdvisoryGroup) - Static method in class com.agenarisk.api.util.Advisory: Destroys an AdvisoryGroup and breaks links to other objects.
destroyLogicLink() - Method in class com.agenarisk.api.model.CrossNetworkLink: Destroys the underlying logic link.
destroyLogicLink() - Method in class com.agenarisk.api.model.Link: Destroys the underlying logic link
Has no effect if the underlying logical network does not contain either of the nodes.
discovery - Enum constant in enum com.agenarisk.learning.structure.execution.ConfiguredExecutor.Stage
Discovery - Class in com.agenarisk.learning.structure.result
Discovery() - Constructor for class com.agenarisk.learning.structure.result.Discovery
DiscreteReal - Enum constant in enum com.agenarisk.api.model.Node.Type
discreteTails - Enum constant in enum com.agenarisk.api.model.Settings.Field
displayable - Enum constant in enum com.agenarisk.api.model.DataSet.Field

E

entries - Enum constant in enum com.agenarisk.api.model.Observation.Field
entropy - Enum constant in enum com.agenarisk.api.io.stub.SummaryStatistic.Field
entry - Enum constant in enum com.agenarisk.api.model.Network.ModificationLog
entry - Enum constant in enum com.agenarisk.api.model.Observation.Field
equals(Object) - Method in class com.agenarisk.api.model.field.Id: Compares this and specified objects.
equals(Object) - Method in class com.agenarisk.api.model.Link: Checks equality of a given object to this Link.
equals(Object) - Method in class com.agenarisk.api.model.Network: Checks equality of a given object to this Network.
equals(Object) - Method in class com.agenarisk.api.model.Node: Checks equality of a given object to this Node.
equalsIgnoreCase(JSONArray, JSONArray) - Static method in class com.agenarisk.api.util.JSONUtils: Checks for deep equality of two JSONArrays, resolving elements that are JSONObjects or JSONArrays recursively.
equalsIgnoreCase(JSONObject, JSONObject) - Static method in class com.agenarisk.api.util.JSONUtils: Checks for deep equality of two JSONObjects, resolving elements that are JSONObjects or JSONArrays recursively.
evaluation - Enum constant in enum com.agenarisk.learning.structure.execution.ConfiguredExecutor.Stage
EvaluationConfigurer - Class in com.agenarisk.learning.structure.config
EvaluationConfigurer() - Constructor for class com.agenarisk.learning.structure.config.EvaluationConfigurer
EvaluationConfigurer(Config) - Constructor for class com.agenarisk.learning.structure.config.EvaluationConfigurer
EvaluationExecutor - Class in com.agenarisk.learning.structure.config
EvaluationExecutor() - Constructor for class com.agenarisk.learning.structure.config.EvaluationExecutor
EvaluationExecutor(Config) - Constructor for class com.agenarisk.learning.structure.config.EvaluationExecutor
Executable - Interface in com.agenarisk.learning.structure.config
execute() - Method in class com.agenarisk.api.tools.calculator.Calculator
execute() - Method in class com.agenarisk.api.tools.sensitivity.Sensitivity
execute() - Method in class com.agenarisk.learning.structure.config.AveragingExecutor
execute() - Method in class com.agenarisk.learning.structure.config.EvaluationExecutor
execute() - Method in interface com.agenarisk.learning.structure.config.Executable
execute() - Method in class com.agenarisk.learning.structure.config.GenerationExecutor
execute() - Method in class com.agenarisk.learning.structure.config.MergerExecutor
execute() - Method in class com.agenarisk.learning.structure.config.PerformanceEvaluationExecutor
execute() - Method in class com.agenarisk.learning.structure.config.StructureLearnerExecutor
execute() - Method in class com.agenarisk.learning.structure.config.TableLearningExecutor
executeFromJson(JSONObject) - Static method in class com.agenarisk.learning.structure.execution.ConfiguredExecutor
executeJson(String) - Method in class com.agenarisk.learning.structure.StructureLearner
executeJson(JSONObject) - Method in class com.agenarisk.learning.structure.StructureLearner
exitOnError(boolean) - Method in class com.agenarisk.api.tools.calculator.Calculator
export(Model.ExportFlag...) - Method in class com.agenarisk.api.model.Model: Returns the Model as a minimal JSON.
Keeps only elements essential for a clean calculation.
expression - Enum constant in enum com.agenarisk.api.model.NodeConfiguration.Table
Expression - Enum constant in enum com.agenarisk.api.model.NodeConfiguration.TableType
expressions - Enum constant in enum com.agenarisk.api.model.NodeConfiguration.Table
extract(Model) - Static method in class com.agenarisk.learning.structure.utility.CmpxStructureExtractor
extract(Model, List<Object>) - Static method in class com.agenarisk.learning.structure.utility.CmpxStructureExtractor
extractJSONArray(String) - Static method in class com.agenarisk.api.io.FileAdapter: Reads the content of the file at the provided path as JSONArray
extractJSONObject(String) - Static method in class com.agenarisk.api.io.FileAdapter: Reads the content of the file at the provided path.It checks whether the content begins as JSON or XML and will try to read it as such.
extractNPTColumns(JSONArray) - Static method in class com.agenarisk.api.model.NodeConfiguration: NPT in JSON is given by rows, while ExtendedNode expects an array of columns, so we will need to invert it.

F

factorize() - Method in class com.agenarisk.api.model.Model: Performs binary factorization on the model if there are any simulation nodes with more than 3 parents.
This involves the model being recreated from scratch and all previously held references to pre-existing objects in the Model will become invalid and should be released.
FileAdapter - Class in com.agenarisk.api.io: FileAdapter is a helper class for AgenaRisk API to abstract file I/O from other components.
FileAdapter() - Constructor for class com.agenarisk.api.io.FileAdapter
FileIOException - Exception in com.agenarisk.api.exception
FileIOException(String) - Constructor for exception com.agenarisk.api.exception.FileIOException
FileIOException(String, Throwable) - Constructor for exception com.agenarisk.api.exception.FileIOException
filename - Enum constant in enum com.agenarisk.api.io.stub.Graphics.Images
fromJson(JSONObject) - Method in class com.agenarisk.api.model.Settings: Applies Model settings from JSON.

G

generateTableFromRows(Double[][]) - Static method in class com.agenarisk.api.model.NodeTemplate
generation - Enum constant in enum com.agenarisk.learning.structure.execution.ConfiguredExecutor.Stage
GenerationConfigurer - Class in com.agenarisk.learning.structure.config
GenerationConfigurer() - Constructor for class com.agenarisk.learning.structure.config.GenerationConfigurer
GenerationConfigurer(Config) - Constructor for class com.agenarisk.learning.structure.config.GenerationConfigurer
GenerationConfigurer.Strategy - Enum in com.agenarisk.learning.structure.config
GenerationExecutor - Class in com.agenarisk.learning.structure.config
GenerationExecutor() - Constructor for class com.agenarisk.learning.structure.config.GenerationExecutor
GenerationExecutor(Config) - Constructor for class com.agenarisk.learning.structure.config.GenerationExecutor
GesConfigurer - Class in com.agenarisk.learning.structure.config
GesConfigurer() - Constructor for class com.agenarisk.learning.structure.config.GesConfigurer
GesConfigurer(Config) - Constructor for class com.agenarisk.learning.structure.config.GesConfigurer
getAbsoluteError() - Method in class com.agenarisk.learning.structure.result.PerformanceEvaluation
getAlgorithm() - Method in class com.agenarisk.learning.structure.result.Discovery
getAllowedFunctionTokens() - Method in class com.agenarisk.api.model.Node: Returns a list of parent IDs, variable names etc to use as parseable function tokens.
getAncestors() - Method in class com.agenarisk.api.model.Node: Builds and returns a set of ancestors for this Node.
Does not include itself.
Does not follow cross-network links (only includes Nodes in the same Network).
getAvailableDataSetId(String) - Method in class com.agenarisk.api.model.Model: Generates a new DataSet ID that is guaranteed to be available at the return time.
getBicScore() - Method in class com.agenarisk.learning.structure.result.StructureEvaluation
getBrierScore() - Method in class com.agenarisk.learning.structure.result.PerformanceEvaluation
getCalculationResult() - Method in class com.agenarisk.api.model.ResultValue: Gets the CalculationResult.
getCalculationResult(DataSet, Node) - Static method in class com.agenarisk.api.model.CalculationResult: Gets a CalculationResult that reflects the status of the underlying logic structure at resolution time.
getCalculationResult(Node) - Method in class com.agenarisk.api.model.DataSet: Returns the CalculationResult for the given Node.
getCalculationResults() - Method in class com.agenarisk.api.model.DataSet: Gets all CalculationResults for all Nodes for this DataSet.
getCalculationResults(Network) - Method in class com.agenarisk.api.model.DataSet: Maps nodes to calculation results in the given network in this data set.
getCause() - Method in class com.agenarisk.api.util.Advisory.AdvisoryMessage: Getter for the Throwable cause.
getChildren() - Method in interface com.agenarisk.api.model.interfaces.Networked: Builds and returns a set of children, which is valid at the time of request.
getChildren() - Method in class com.agenarisk.api.model.Network: Builds and returns a set of Networks, which are children of this Network.
getChildren() - Method in class com.agenarisk.api.model.Node: Builds and returns a set of Node's children, which is valid at the time of request.
getComplexityScore() - Method in class com.agenarisk.learning.structure.result.StructureEvaluation
getConfidenceInterval() - Method in class com.agenarisk.api.model.CalculationResult: Gets confidence interval value for this result
getConfig() - Method in class com.agenarisk.api.tools.SensitivityAnalyser: Compiles an effective configuration of this analysis and returns it as a JSON.
getConfig() - Method in class com.agenarisk.learning.structure.config.Configurer
getConfig() - Method in class com.agenarisk.learning.structure.execution.ConfiguredExecutor
getConstraintsTargetPenaltyReductionRate() - Method in class com.agenarisk.learning.structure.config.KnowledgeConfigurer
getConvergence() - Method in class com.agenarisk.api.model.Settings: Gets simulation entropy error convergence threshold.
getConvergenceThreshold() - Method in class com.agenarisk.learning.structure.config.TableLearningConfigurer
getCurrentThreadGroup() - Static method in class com.agenarisk.api.util.Advisory: Returns AdvisoryGroup to which Thread.currentThread() is linked to, or null.
getData() - Method in class com.agenarisk.learning.structure.execution.ConfiguredExecutor
getDataFilePath() - Method in class com.agenarisk.learning.structure.execution.ConfiguredExecutor
getDataPath() - Method in class com.agenarisk.learning.structure.config.AveragingConfigurer
getDataPath() - Method in class com.agenarisk.learning.structure.config.GenerationConfigurer
getDataPath() - Method in class com.agenarisk.learning.structure.config.PerformanceEvaluationConfigurer
getDataPath() - Method in class com.agenarisk.learning.structure.config.TableLearningConfigurer
getDataSet() - Method in class com.agenarisk.api.model.CalculationResult: Returns the DataSet to which the CalculationResult belongs to.
getDataSet() - Method in class com.agenarisk.api.model.Observation: Returns DataSet that contains this Observation.
getDataSet(String) - Method in class com.agenarisk.api.model.Model: Looks up and returns a DataSet by its ID.
getDataSetIndex() - Method in class com.agenarisk.api.model.DataSet: Gets the index of corresponding logic scenario in the underlying logical model structure
getDataSetList() - Method in class com.agenarisk.api.model.Model: Returns DataSets of this Model as a list
getDataSets() - Method in class com.agenarisk.api.model.Model: Returns a copy of ID-Network map.
getDataWeight() - Method in class com.agenarisk.learning.structure.config.TableLearningConfigurer
getDescendants() - Method in class com.agenarisk.api.model.Node: Builds and returns a set of descendants for this Node.
Does not include itself.
Does not follow cross-network links (only includes Nodes in the same Network).
getDescription() - Method in interface com.agenarisk.api.model.interfaces.Named: Gets the description of this Named object
getDescription() - Method in class com.agenarisk.api.model.Network: Gets the description of this Network.
getDescription() - Method in class com.agenarisk.api.model.Node: Gets the description of this node
getDiscoveries() - Method in class com.agenarisk.learning.structure.result.Result
getEntries() - Method in class com.agenarisk.api.model.Observation: Returns a map of observation entries.
getEntropy() - Method in class com.agenarisk.api.model.CalculationResult: Gets entropy error value for this result
getFreeParameters() - Method in class com.agenarisk.learning.structure.result.StructureEvaluation
getFromNode() - Method in class com.agenarisk.api.model.Link: Returns the source Link Node.
getFullReport() - Method in class com.agenarisk.api.tools.SensitivityAnalyser: Generates response curve graphs, tables and tornado graphs.
Also includes full JSON configuration for this analysis.
getGraphicsJson() - Method in class com.agenarisk.api.model.Network
getGraphicsJson() - Method in class com.agenarisk.api.model.Node
getGroupByKey(Object) - Static method in class com.agenarisk.api.util.Advisory: Returns an AdvisoryGroup instance for the provided key.
If no AdvisoryGroup exists for this key, it is created and then returned.
getGroupByThread(Thread) - Static method in class com.agenarisk.api.util.Advisory: Returns AdvisoryGroup to which the provided Thread is linked to is linked to, or null.
getGroupThreads() - Method in class com.agenarisk.api.util.Advisory.AdvisoryGroup: Returns the Set of Threads linked to this AdvisoryGroup.
Warning: modifying this Set directly will affect the workings of the Advisory and is NOT recommended.
getId() - Method in class com.agenarisk.api.model.DataSet: Gets the ID of this DataSet.
getId() - Method in interface com.agenarisk.api.model.interfaces.Identifiable: Returns the ID of the object.
getId() - Method in class com.agenarisk.api.model.Network: Gets the ID of this Network.
getId() - Method in class com.agenarisk.api.model.Node: Gets the ID of this Node.
getIdMap(Class<? extends Identifiable>) - Method in interface com.agenarisk.api.model.interfaces.IdContainer: Returns the map of identifiable items based on.
getIdMap(Class<? extends Identifiable>) - Method in class com.agenarisk.api.model.Model: Deprecated.
For internal use only
getIdMap(Class<? extends Identifiable>) - Method in class com.agenarisk.api.model.Network: Deprecated.
For internal use only
getInputDirPath() - Method in class com.agenarisk.learning.structure.config.MergerConfigurer
getInputDirPath() - Method in class com.agenarisk.learning.structure.execution.ConfiguredExecutor
getIterations() - Method in class com.agenarisk.api.model.Settings: Returns maximum number of iterations during model calculation.
getJSON() - Method in class com.agenarisk.api.model.NodeTemplate
getJsonAudit() - Method in class com.agenarisk.api.model.Model: Returns audit stored as JSON
getJsonGraphics() - Method in class com.agenarisk.api.model.Model: Returns model graphics stored as JSON
getJsonPictures() - Method in class com.agenarisk.api.model.Model: Returns Risk Map pictures stored as JSON
getJsonTexts() - Method in class com.agenarisk.api.model.Model: Returns Risk Map texts stored as JSON
getKey() - Method in class com.agenarisk.api.util.Advisory.AdvisoryGroup: Getter for AdvisoryGroup key
getKnowledgeConfiguration() - Method in class com.agenarisk.learning.structure.config.GesConfigurer: Allows to add custom configuration of the knowledge component
getKnowledgeConfiguration() - Method in class com.agenarisk.learning.structure.config.HcConfigurer: Allows to add custom configuration of the knowledge component
getKnowledgeConfiguration() - Method in class com.agenarisk.learning.structure.config.LearningConfigurer
getKnowledgeConfiguration() - Method in class com.agenarisk.learning.structure.config.MahcConfigurer: Allows to add custom configuration of the knowledge component
getKnowledgeConfiguration() - Method in class com.agenarisk.learning.structure.config.SaiyanHConfigurer: Allows to add custom configuration of the knowledge component
getKnowledgeConfiguration() - Method in class com.agenarisk.learning.structure.config.TabuConfigurer: Allows to add custom configuration of the knowledge component
getKnowledgeConfiguration(T) - Method in class com.agenarisk.learning.structure.config.LearningConfigurer
getLabel() - Method in class com.agenarisk.api.model.ResultValue: Gets the entry label.
getLabel() - Method in class com.agenarisk.api.model.State: Gets the state's label.
getLabel() - Method in class com.agenarisk.learning.structure.result.Discovery
getLabel() - Method in class com.agenarisk.learning.structure.result.PerformanceEvaluation
getLabel() - Method in class com.agenarisk.learning.structure.result.StructureEvaluation
getLinksIn() - Method in interface com.agenarisk.api.model.interfaces.Networked: Returns a copy of the list of incoming Links.
getLinksIn() - Method in class com.agenarisk.api.model.Network: Returns a copy of the incoming Links list.
getLinksIn() - Method in class com.agenarisk.api.model.Node: Returns a copy of the list of incoming Links.
getLinksOut() - Method in interface com.agenarisk.api.model.interfaces.Networked: Returns a copy of the list of outgoing Links.
getLinksOut() - Method in class com.agenarisk.api.model.Network: Returns a copy of the outgoing Links list.
getLinksOut() - Method in class com.agenarisk.api.model.Node: Returns a copy of the list of outgoing Links.
getLogicCalculationResult() - Method in class com.agenarisk.api.model.CalculationResult: Deprecated.
Will be affected by module architecture in the future and should not be used.
getLogicLink() - Method in class com.agenarisk.api.model.CrossNetworkLink: Returns the underlying logical link.
getLogicModel() - Method in class com.agenarisk.api.model.Model: Returns the underlying ExtendedBN.
getLogicNetwork() - Method in class com.agenarisk.api.model.Network: Deprecated.
Will be made module-restricted in the future.
getLogicNode() - Method in class com.agenarisk.api.model.Node: Returns the underlying ExtendedNode.
getLogicObservation() - Method in class com.agenarisk.api.model.Observation: Getter for the logic observation associated with this Observation.
getLogicScenario() - Method in class com.agenarisk.api.model.DataSet: Deprecated.
Will be made module-restricted in the future.
getLogicState() - Method in class com.agenarisk.api.model.State: Deprecated.
Will be affected by module architecture in the future and should not be used.
getLogLikelihoodScore() - Method in class com.agenarisk.learning.structure.result.StructureEvaluation
getLogProbabilityOfEvidence(Network) - Method in class com.agenarisk.api.model.DataSet
getLowerBound() - Method in class com.agenarisk.api.model.ResultInterval: Gets lower bound of the range.
getLowerPercentile() - Method in class com.agenarisk.api.model.CalculationResult: Gets lower percentile value for this result.
getLowerPercentileSetting() - Method in class com.agenarisk.api.model.Node
getMacroAuc() - Method in class com.agenarisk.learning.structure.result.PerformanceEvaluation
getMaximumEdgeCount() - Method in class com.agenarisk.learning.structure.config.GenerationConfigurer
getMaxInDegreePreProcessing() - Method in class com.agenarisk.learning.structure.config.MahcConfigurer
getMaxIterations() - Method in class com.agenarisk.learning.structure.config.TableLearningConfigurer
getMean() - Method in class com.agenarisk.api.model.CalculationResult: Gets mean value for this result.
getMedian() - Method in class com.agenarisk.api.model.CalculationResult: Gets median value for this result.
getMessage() - Method in class com.agenarisk.api.util.Advisory.AdvisoryMessage: Getter for the message text.
getMessage() - Method in class com.agenarisk.learning.structure.result.Discovery
getMessage() - Method in class com.agenarisk.learning.structure.result.PerformanceEvaluation
getMessage() - Method in class com.agenarisk.learning.structure.result.StructureEvaluation
getMessages() - Method in class com.agenarisk.api.util.Advisory.AdvisoryGroup: Returns the List of AdvisoryMessages for this AdvisoryGroup.
Warning: modifying this List directly will affect the workings of the Advisory and is NOT recommended.
getMicroAuc() - Method in class com.agenarisk.learning.structure.result.PerformanceEvaluation
getMissingValue() - Method in class com.agenarisk.learning.structure.config.TableLearningConfigurer
getModel() - Method in class com.agenarisk.api.model.DataSet: Returns the Model that this DataSet belongs to.
getModel() - Method in class com.agenarisk.api.model.Network: Returns the Model that this Network belongs to.
getModel() - Method in class com.agenarisk.learning.structure.config.GenerationConfigurer
getModel() - Method in class com.agenarisk.learning.structure.config.MergerConfigurer
getModel() - Method in class com.agenarisk.learning.structure.config.TableLearningConfigurer
getModel() - Method in class com.agenarisk.learning.structure.result.Discovery
getModelFilePrefix() - Method in class com.agenarisk.learning.structure.result.Discovery
getModelLabel() - Method in class com.agenarisk.learning.structure.result.PerformanceEvaluation
getModelLabel() - Method in class com.agenarisk.learning.structure.result.StructureEvaluation
getModelPath() - Method in class com.agenarisk.learning.structure.config.GenerationConfigurer
getModelPath() - Method in class com.agenarisk.learning.structure.config.TableLearningConfigurer
getModelPath() - Method in class com.agenarisk.learning.structure.result.Discovery
getModelPrefix() - Method in class com.agenarisk.learning.structure.config.MergerConfigurer
getModelPrefix() - Method in class com.agenarisk.learning.structure.config.TableLearningConfigurer
getModelPrefixes() - Method in class com.agenarisk.learning.structure.config.MergerConfigurer
getModelPrefixes() - Method in class com.agenarisk.learning.structure.config.PerformanceEvaluationConfigurer
getModelStageLabel() - Method in class com.agenarisk.learning.structure.config.TableLearningConfigurer
getName() - Method in interface com.agenarisk.api.model.interfaces.Named: Gets the name of this Named object.
getName() - Method in class com.agenarisk.api.model.Network: Gets the name of this Network.
getName() - Method in class com.agenarisk.api.model.Node: Gets the name of this node.
getName() - Method in class com.agenarisk.api.model.Variable: Get the name of this Variable.
getNetwork() - Method in class com.agenarisk.api.model.Node: Returns the Network containing this Node.
getNetwork(String) - Method in class com.agenarisk.api.model.Model: Looks up and returns a Network by its ID.
getNetworkList() - Method in class com.agenarisk.api.model.Model: Returns Networks of this Model as a list
getNetworks() - Method in class com.agenarisk.api.model.Model: Returns a copy of ID-Network map.
getNNJArray(JSONArray, int) - Static method in class com.agenarisk.api.util.JSONUtils
getNNJArray(JSONObject, Object) - Static method in class com.agenarisk.api.util.JSONUtils
getnnJObject(JSONArray, int) - Static method in class com.agenarisk.api.util.JSONUtils
getNNJObject(JSONObject, Object) - Static method in class com.agenarisk.api.util.JSONUtils
getNode() - Method in class com.agenarisk.api.model.CalculationResult: Returns the CalculationResult's Node.
getNode() - Method in class com.agenarisk.api.model.Observation: Returns the observed Node.
getNode() - Method in class com.agenarisk.api.model.State: Gets the state's Node.
getNode(String) - Method in class com.agenarisk.api.model.Network: Gets Node from the Network by its unique ID.
getNodeDataWeightsCustom() - Method in class com.agenarisk.learning.structure.config.TableLearningConfigurer
getNodeList() - Method in class com.agenarisk.api.model.Network: Returns Nodes of this Network as a list
getNodes() - Method in class com.agenarisk.api.model.Network: Returns a copy of ID-Node map.
getObservation(Node) - Method in class com.agenarisk.api.model.DataSet: Returns a view of the observation for the given node if there is one.
getObservations() - Method in class com.agenarisk.api.model.DataSet: Returns all observations in this DataSet for all Networks and Nodes.
getObservationsAndVariables() - Method in class com.agenarisk.api.model.DataSet: Returns all Observations and VariableObservations in this DataSet for all Networks and Nodes.
getObservationsAndVariables(Node) - Method in class com.agenarisk.api.model.DataSet: Returns all Observations and VariableObservations in this DataSet for the provided Node.
getOutputDirPath() - Method in class com.agenarisk.learning.structure.config.MergerConfigurer
getOutputDirPath() - Method in class com.agenarisk.learning.structure.config.PerformanceEvaluationConfigurer
getOutputDirPath() - Method in class com.agenarisk.learning.structure.execution.ConfiguredExecutor
getParents() - Method in interface com.agenarisk.api.model.interfaces.Networked: Builds and returns a set of parents, which is valid at the time of request.
getParents() - Method in class com.agenarisk.api.model.Network: Builds and returns a set of Networks, which are parents of this Network.
getParents() - Method in class com.agenarisk.api.model.Node: Builds and returns a set of Node's parents, which is valid at the time of request.
getPercentile() - Method in class com.agenarisk.api.model.CalculationResult: Gets percentile value for this result.
getPercentile(double) - Method in class com.agenarisk.api.model.CalculationResult: Gets a specified percentile value for this result.
getPerformanceEvaluations() - Method in class com.agenarisk.learning.structure.result.Result
getPipelineResult() - Method in class com.agenarisk.learning.structure.config.PerformanceEvaluationConfigurer
getProbabilityOfEvidence(Network) - Method in class com.agenarisk.api.model.DataSet
getResult() - Method in class com.agenarisk.learning.structure.execution.ConfiguredExecutor
getResultValue(String) - Method in class com.agenarisk.api.model.CalculationResult: Returns a specific ResultValue by its label or null.
getResultValues() - Method in class com.agenarisk.api.model.CalculationResult: Returns the Result Values that make up CalculationResult for this Node.
getRocAucs() - Method in class com.agenarisk.learning.structure.result.PerformanceEvaluation
getRocPoints() - Method in class com.agenarisk.learning.structure.result.PerformanceEvaluation
getRocScores() - Method in class com.agenarisk.learning.structure.result.PerformanceEvaluation
getRocTruths() - Method in class com.agenarisk.learning.structure.result.PerformanceEvaluation
getSampleSize() - Method in class com.agenarisk.api.model.Settings: Gets ranked node sample size.
getSettings() - Method in class com.agenarisk.api.model.Model: Returns Model Settings object.
getSphericalScore() - Method in class com.agenarisk.learning.structure.result.PerformanceEvaluation
getStageLabel() - Method in class com.agenarisk.learning.structure.config.PerformanceEvaluationConfigurer
getStandardDeviation() - Method in class com.agenarisk.api.model.CalculationResult: Gets standard deviation value for this result.
getState(Node, String) - Static method in class com.agenarisk.api.model.State: Find a state by given label in the given Node's underlying logic node.
getState(String) - Method in class com.agenarisk.api.model.Node: Find a state by given label in this Node's underlying logic node.
getStates() - Method in class com.agenarisk.api.model.Node: Returns a representation of Node's states at the time of the request.
The list will not be updated to reflect any changes, and no changes to the list or the States will be reflected in the Model.
getStateToPass() - Method in class com.agenarisk.api.model.CrossNetworkLink: Returns the state to pass with this cross-network link.
getStrategy() - Method in class com.agenarisk.learning.structure.config.GenerationConfigurer
getStructureEvaluations() - Method in class com.agenarisk.learning.structure.result.Result
getSummary() - Method in class com.agenarisk.learning.structure.result.Result
getTableType() - Method in class com.agenarisk.api.model.Node: Returns the type of the table configured for the Node.
Possible values are:
• Manual
• Expression
• Partitioned
getTarget() - Method in class com.agenarisk.learning.structure.config.PerformanceEvaluationConfigurer
getTolerance() - Method in class com.agenarisk.api.model.Settings: Gets simulation evidence tolerance percent.
getToNode() - Method in class com.agenarisk.api.model.Link: Returns the target Link Node.
getType() - Method in class com.agenarisk.api.model.CrossNetworkLink: Returns the type of this cross-network link.
getType() - Method in class com.agenarisk.api.model.Node: Gets the Type of this Node.
getUpperBound() - Method in class com.agenarisk.api.model.ResultInterval: Gets upper bound of the range.
getUpperPercentile() - Method in class com.agenarisk.api.model.CalculationResult: Gets upper percentile value for this result.
getUpperPercentileSetting() - Method in class com.agenarisk.api.model.Node
getValue() - Method in class com.agenarisk.api.model.field.Id: Returns this ID's value.
getValue() - Method in class com.agenarisk.api.model.ResultValue: Gets the probability mass value.
getValue() - Method in class com.agenarisk.api.model.Variable: Get the value of this Variable.
getValueSeparator() - Method in class com.agenarisk.learning.structure.config.PerformanceEvaluationConfigurer
getValueSeparator() - Method in class com.agenarisk.learning.structure.config.TableLearningConfigurer
getVariable(String) - Method in class com.agenarisk.api.model.Node: Retrieves and returns the Variable by name.
getVariableName() - Method in class com.agenarisk.api.model.VariableObservation: Returns the name of the Variable associated with this Observation.
getVariableObservation(Node, String) - Method in class com.agenarisk.api.model.DataSet: Returns a view of the VariableObservation for the provided Node and variable name if there is one.
getVariableObservations() - Method in class com.agenarisk.api.model.DataSet: Returns all VariableObservations in this DataSet for all Networks and Nodes.
getVariableObservations(Node) - Method in class com.agenarisk.api.model.DataSet: Returns a view of VariableObservations for the provided Node.
getVariables() - Method in class com.agenarisk.api.model.Node: Gets an unmodifiable list of all Variables.
Will not reflect Variables being added or deleted from the Node.
getVariableValue() - Method in class com.agenarisk.api.model.VariableObservation: Returns the value of this VariableObservation as a single double or zero if no value is set.
getVariance() - Method in class com.agenarisk.api.model.CalculationResult: Gets variance value for this result.
getVersionText() - Static method in class com.agenarisk.api.util.VersionApi
graphics - Enum constant in enum com.agenarisk.api.io.stub.Graphics.Field
graphics - Enum constant in enum com.agenarisk.api.io.stub.NodeGraphics.Field
Graphics - Class in com.agenarisk.api.io.stub: This is a stub class that only contains field values for input/output to XML and JSON format.
Graphics() - Constructor for class com.agenarisk.api.io.stub.Graphics
Graphics.CanvasData - Enum in com.agenarisk.api.io.stub: This is set of fields for input/output to XML and JSON format
Graphics.Field - Enum in com.agenarisk.api.io.stub: This is set of fields for input/output to XML and JSON format
Graphics.Images - Enum in com.agenarisk.api.io.stub: This is set of fields for input/output to XML and JSON format
Graphics.PaneSettings - Enum in com.agenarisk.api.io.stub: This is set of fields for input/output to XML and JSON format
Graphics.WindowSettings - Enum in com.agenarisk.api.io.stub: This is set of fields for input/output to XML and JSON format

H

hasAncestor(N) - Method in interface com.agenarisk.api.model.interfaces.Networked: Checks recursively whether any of the links are incoming from the provided ancestor.
hasDescendant(N) - Method in interface com.agenarisk.api.model.interfaces.Networked: Checks recursively whether any of the links are outgoing to the provided descendant.
hashCode() - Method in class com.agenarisk.api.model.field.Id: Returns a hash code of this ID based on its value.
hashCode() - Method in class com.agenarisk.api.model.Link: Returns a hash code value for this object.
hashCode() - Method in class com.agenarisk.api.model.Network: Returns a hash code value for this object.
hashCode() - Method in class com.agenarisk.api.model.Node: Returns a hash code value for this object.
hasObservation(Node) - Method in class com.agenarisk.api.model.DataSet: Checks whether the Node has an observation set.
hasVariableObservation(Node, String) - Method in class com.agenarisk.api.model.DataSet: Checks whether the provided variable in the provided node is observed in this DataSet.
HcConfigurer - Class in com.agenarisk.learning.structure.config
HcConfigurer() - Constructor for class com.agenarisk.learning.structure.config.HcConfigurer
HcConfigurer(Config) - Constructor for class com.agenarisk.learning.structure.config.HcConfigurer
height - Enum constant in enum com.agenarisk.api.io.stub.Graphics.WindowSettings

I

id - Enum constant in enum com.agenarisk.api.io.stub.Text.Field
id - Enum constant in enum com.agenarisk.api.model.DataSet.Field
id - Enum constant in enum com.agenarisk.api.model.Network.Field
id - Enum constant in enum com.agenarisk.api.model.Node.Field
Id - Class in com.agenarisk.api.model.field: This class represents a unique String ID
Id(String) - Constructor for class com.agenarisk.api.model.field.Id: Constructor of this ID.
IdContainer<E extends Exception> - Interface in com.agenarisk.api.model.interfaces: Classes that have a collection of some identifiable objects that have a unique ID should implement this.
Identifiable<E extends Exception> - Interface in com.agenarisk.api.model.interfaces: Objects that have a unique ID and are members of some collection in a container class should implement this.
IgnoreErrors - Enum constant in enum com.agenarisk.api.model.Model.ConversionFlag: Ignore static conversion errors for individual nodes (e.g.
image - Enum constant in enum com.agenarisk.api.io.stub.Graphics.Images
images - Enum constant in enum com.agenarisk.api.io.stub.Graphics.Images
InconsistentEvidenceException - Exception in com.agenarisk.api.exception: Thrown when specifically inconsistent evidence was detected and caused a calculation failure.
InconsistentEvidenceException(String) - Constructor for exception com.agenarisk.api.exception.InconsistentEvidenceException
InconsistentEvidenceException(String, Throwable) - Constructor for exception com.agenarisk.api.exception.InconsistentEvidenceException
input - Enum constant in enum com.agenarisk.api.model.NodeConfiguration.Field
IntegerInterval - Enum constant in enum com.agenarisk.api.model.Node.Type
isAllVariablesRelevant() - Method in class com.agenarisk.learning.structure.config.KnowledgeConfigurer: If set, all variables in the training data must be connected within the same graph and no disjointed variables are allowed
isAverage() - Method in class com.agenarisk.learning.structure.result.Discovery
isCalculated() - Method in class com.agenarisk.api.model.Model: Checks whether the model had been successfully calculated and requires no calculation at this time.
Model is considered calculated if all Networks had been calculated.
isCalculateRoc() - Method in class com.agenarisk.learning.structure.config.PerformanceEvaluationConfigurer
isConnectedInput() - Method in class com.agenarisk.api.model.Node: Returns true if this Node has an incoming link from another Network.
isConnectedOutput() - Method in class com.agenarisk.api.model.Node: Returns true if this Node has an outgoing link to another Network.
isConstraintsBDN() - Method in class com.agenarisk.learning.structure.config.KnowledgeConfigurer
isConstraintsBDNGuarantee() - Method in class com.agenarisk.learning.structure.config.KnowledgeConfigurer
isConstraintsDirectedEnabled() - Method in class com.agenarisk.learning.structure.config.KnowledgeConfigurer
isConstraintsForbiddenEnabled() - Method in class com.agenarisk.learning.structure.config.KnowledgeConfigurer
isConstraintsInitialGraph() - Method in class com.agenarisk.learning.structure.config.KnowledgeConfigurer
isConstraintsProhibitEdgesSameTemporalTier() - Method in class com.agenarisk.learning.structure.config.KnowledgeConfigurer
isConstraintsTargetPenaltyReductionRateEnabled() - Method in class com.agenarisk.learning.structure.config.KnowledgeConfigurer
isConstraintsTemporalEnabled() - Method in class com.agenarisk.learning.structure.config.KnowledgeConfigurer
isConstraintsUndirectedEnabled() - Method in class com.agenarisk.learning.structure.config.KnowledgeConfigurer
isContinuous() - Method in class com.agenarisk.api.model.CalculationResult: Returns if the calculation result is for a continuous variable.
isCustomKnowledgeEnabled() - Method in class com.agenarisk.learning.structure.config.KnowledgeConfigurer: If set, custom knowledge settings will be applied
isDiscretizeTails() - Method in class com.agenarisk.api.model.Settings: Checks whether tails are discretized during simulated calculation.
isLinkedTo(Thread) - Method in class com.agenarisk.api.util.Advisory.AdvisoryGroup: Checks if this AdvisoryGroup is linked to the provided Thread.
isNumericInterval() - Method in class com.agenarisk.api.model.Node: Returns true if the Node is continuous or integer interval
isSimulated() - Method in class com.agenarisk.api.model.Node: Returns true if the Node is simulated and false otherwise.
isStatesFromData() - Method in class com.agenarisk.learning.structure.config.AveragingConfigurer
isStatesFromData() - Method in class com.agenarisk.learning.structure.config.GenerationConfigurer
isSuccess() - Method in class com.agenarisk.learning.structure.result.Discovery
isSuccess() - Method in class com.agenarisk.learning.structure.result.PerformanceEvaluation
isSuccess() - Method in class com.agenarisk.learning.structure.result.StructureEvaluation
iterations - Enum constant in enum com.agenarisk.api.model.Settings.Field

J

JSONAdapter - Class in com.agenarisk.api.io: JSONAdapter enables encoding of an API1 model as JSON.
JSONAdapter() - Constructor for class com.agenarisk.api.io.JSONAdapter
JSONUtils - Class in com.agenarisk.api.util: Provides convenience functionality for working with JSONObject and JSONArray classes.
JSONUtils() - Constructor for class com.agenarisk.api.util.JSONUtils

K

KEEP_GRAPHICS - Enum constant in enum com.agenarisk.api.model.Model.ExportFlag: Keep Graphics
KEEP_META - Enum constant in enum com.agenarisk.api.model.Model.ExportFlag: Keep meta, audit, names, notes and descriptions of Model, Networks and Nodes
KEEP_OBSERVATIONS - Enum constant in enum com.agenarisk.api.model.Model.ExportFlag: Keep DataSet observations
KEEP_RESULTS - Enum constant in enum com.agenarisk.api.model.Model.ExportFlag: Keep DataSet results
KEEP_RISK_TABLE - Enum constant in enum com.agenarisk.api.model.Model.ExportFlag: Keep Risk Table
KEEP_TABLES - Enum constant in enum com.agenarisk.api.model.Model.ExportFlag: Keep tables for simulation nodes
KEEP_TAILS_ZERO_REGIONS - Enum constant in enum com.agenarisk.api.model.Model.CalculationFlag: While propagating simulation nodes, keep tails and zero mass regions (default is to prune and compact)
KnowledgeConfigurer<T extends LearningConfigurer> - Class in com.agenarisk.learning.structure.config
KnowledgeConfigurer(Config, T) - Constructor for class com.agenarisk.learning.structure.config.KnowledgeConfigurer
KnowledgeConfigurer(T) - Constructor for class com.agenarisk.learning.structure.config.KnowledgeConfigurer

L

label - Enum constant in enum com.agenarisk.api.model.ResultValue.Field
Labelled - Enum constant in enum com.agenarisk.api.model.Node.Type
lastSaved - Enum constant in enum com.agenarisk.api.model.Model.Field
Launcher - Class in com.agenarisk.api.tools.calculator
Launcher - Class in com.agenarisk.api.tools.learning.structure
Launcher - Class in com.agenarisk.api.tools.sensitivity
Launcher - Class in com.agenarisk.api.util
Launcher() - Constructor for class com.agenarisk.api.tools.calculator.Launcher
Launcher() - Constructor for class com.agenarisk.api.tools.learning.structure.Launcher
Launcher() - Constructor for class com.agenarisk.api.tools.sensitivity.Launcher
Launcher() - Constructor for class com.agenarisk.api.util.Launcher
LearningConfigurer<T extends LearningConfigurer> - Class in com.agenarisk.learning.structure.config
LearningConfigurer() - Constructor for class com.agenarisk.learning.structure.config.LearningConfigurer
LearningConfigurer(Config) - Constructor for class com.agenarisk.learning.structure.config.LearningConfigurer
learnWithGes() - Method in class com.agenarisk.learning.structure.StructureLearner
learnWithHc() - Method in class com.agenarisk.learning.structure.StructureLearner
learnWithMahc() - Method in class com.agenarisk.learning.structure.StructureLearner
learnWithSaiyanH() - Method in class com.agenarisk.learning.structure.StructureLearner
learnWithTabu() - Method in class com.agenarisk.learning.structure.StructureLearner
leftPaneExpanded - Enum constant in enum com.agenarisk.api.io.stub.Graphics.PaneSettings
link - Enum constant in enum com.agenarisk.api.model.Link.Field
Link - Class in com.agenarisk.api.model: Link represents a link between two nodes.
Link(Node, Node) - Constructor for class com.agenarisk.api.model.Link: Deprecated.
For internal use only. Use createLink() instead
Link.Field - Enum in com.agenarisk.api.model: This is set of fields for input/output to XML and JSON format
LinkException - Exception in com.agenarisk.api.exception
LinkException(String) - Constructor for exception com.agenarisk.api.exception.LinkException
LinkException(String, Throwable) - Constructor for exception com.agenarisk.api.exception.LinkException
linkFrom(Node) - Method in class com.agenarisk.api.model.Node: Creates a simple Link from the given Node to this Node in the same Network.
linkNodes(Model, JSONArray) - Static method in class com.agenarisk.api.model.Node: Creates links from the given JSON.
linkNodes(Node, Node) - Static method in class com.agenarisk.api.model.Node: Creates a simple Link between two nodes in the same Network.
linkNodes(Node, Node, CrossNetworkLink.Type) - Static method in class com.agenarisk.api.model.Node: Creates a Link between two nodes in same or different Networks.
linkNodes(Node, Node, CrossNetworkLink.Type, String) - Static method in class com.agenarisk.api.model.Node: Creates a Link between two nodes in same or different Networks.
links - Enum constant in enum com.agenarisk.api.model.Link.Field
linkTo(Node) - Method in class com.agenarisk.api.model.Node: Creates a simple Link from this Node to given Node in the same Network.
linkToThread(Thread) - Method in class com.agenarisk.api.util.Advisory.AdvisoryGroup: Links the provided Thread to this AdvisoryGroup.
loadCalculationResult(DataSet, JSONObject) - Static method in class com.agenarisk.api.model.CalculationResult: Loads CalculationResult data from JSON into the underlying logic structure.
loadCalculationResult(JSONObject) - Method in class com.agenarisk.api.model.DataSet: Loads calculation result data for this DataSet from a given JSON and creates corresponding objects in the underlying logic.
loadModel(String) - Static method in class com.agenarisk.api.model.Model: Loads a Model from provided path
loadQuestionnaire(JSONObject) - Method in class com.agenarisk.api.model.Model: Loads a Questionnaire from JSON
loadRiskTable(JSONArray) - Method in class com.agenarisk.api.model.Model: Loads Risk Table from JSON into the current Model
loadSettings(Model, JSONObject) - Static method in class com.agenarisk.api.model.Settings: Utility method to load settings from the provided JSON to the provided Model.
For any missing fields, current model settings (or defaults) will be used.
loadSettings(Model, JSONObject) - Static method in class com.agenarisk.api.model.Settings: Utility method to load settings from the provided JSON to the provided API1 Model.
For any missing fields, current model settings (or defaults) will be used.
Loggable<T extends Configurer> - Interface in com.agenarisk.learning.structure.config
logPe - Enum constant in enum com.agenarisk.api.model.DataSet.Field
lowerPercentile - Enum constant in enum com.agenarisk.api.io.stub.SummaryStatistic.Field
lowerPercentile - Enum constant in enum com.agenarisk.api.model.NodeConfiguration.Percentiles
LowerPercentile - Enum constant in enum com.agenarisk.api.model.CrossNetworkLink.Type

M

MahcConfigurer - Class in com.agenarisk.learning.structure.config
MahcConfigurer() - Constructor for class com.agenarisk.learning.structure.config.MahcConfigurer
MahcConfigurer(Config) - Constructor for class com.agenarisk.learning.structure.config.MahcConfigurer
main(String[]) - Static method in class com.agenarisk.api.tools.calculator.Launcher
main(String[]) - Static method in class com.agenarisk.api.tools.learning.structure.Launcher
main(String[]) - Static method in class com.agenarisk.api.tools.sensitivity.Launcher
main(String[]) - Static method in class com.agenarisk.api.util.Launcher
Manual - Enum constant in enum com.agenarisk.api.model.NodeConfiguration.TableType
Marginals - Enum constant in enum com.agenarisk.api.model.CrossNetworkLink.Type
Max_Absolute - Enum constant in enum com.agenarisk.learning.structure.config.SaiyanHConfigurer.DiscrepancyType
Max_Relative - Enum constant in enum com.agenarisk.learning.structure.config.SaiyanHConfigurer.DiscrepancyType
maximised - Enum constant in enum com.agenarisk.api.io.stub.Graphics.WindowSettings
mean - Enum constant in enum com.agenarisk.api.io.stub.SummaryStatistic.Field
Mean - Enum constant in enum com.agenarisk.api.model.CrossNetworkLink.Type
Mean_Absolute - Enum constant in enum com.agenarisk.learning.structure.config.SaiyanHConfigurer.DiscrepancyType
Mean_Relative - Enum constant in enum com.agenarisk.learning.structure.config.SaiyanHConfigurer.DiscrepancyType
MeanMax_Absolute - Enum constant in enum com.agenarisk.learning.structure.config.SaiyanHConfigurer.DiscrepancyType
median - Enum constant in enum com.agenarisk.api.io.stub.SummaryStatistic.Field
Median - Enum constant in enum com.agenarisk.api.model.CrossNetworkLink.Type
merger - Enum constant in enum com.agenarisk.learning.structure.execution.ConfiguredExecutor.Stage
MergerConfigurer - Class in com.agenarisk.learning.structure.config
MergerConfigurer() - Constructor for class com.agenarisk.learning.structure.config.MergerConfigurer
MergerConfigurer(Config) - Constructor for class com.agenarisk.learning.structure.config.MergerConfigurer
MergerExecutor - Class in com.agenarisk.learning.structure.config
MergerExecutor() - Constructor for class com.agenarisk.learning.structure.config.MergerExecutor
MergerExecutor(Config) - Constructor for class com.agenarisk.learning.structure.config.MergerExecutor
meta - Enum constant in enum com.agenarisk.api.io.stub.Meta.Field
Meta - Class in com.agenarisk.api.io.stub: This is a stub class that only contains field values for input/output to XML and JSON format.
Meta() - Constructor for class com.agenarisk.api.io.stub.Meta
Meta.Field - Enum in com.agenarisk.api.io.stub: This is set of fields for input/output to XML and JSON format
mode - Enum constant in enum com.agenarisk.api.io.stub.RiskTable.Question
model - Enum constant in enum com.agenarisk.api.model.Model.Field
Model - Class in com.agenarisk.api.model: Model class represents an AgenaRisk model that may contain a number of Bayesian networks, datasets etc, equivalent to com.agenarisk.api.model.Model in AgenaRisk Java API v1.
Model.CalculationFlag - Enum in com.agenarisk.api.model
Model.ConversionFlag - Enum in com.agenarisk.api.model
Model.ExportFlag - Enum in com.agenarisk.api.model
Model.Field - Enum in com.agenarisk.api.model: This is set of fields for input/output to XML and JSON format
ModelException - Exception in com.agenarisk.api.exception
ModelException(String) - Constructor for exception com.agenarisk.api.exception.ModelException
ModelException(String, Throwable) - Constructor for exception com.agenarisk.api.exception.ModelException
ModelFromCsvCreator - Class in com.agenarisk.learning.structure.utility
ModelFromCsvCreator() - Constructor for class com.agenarisk.learning.structure.utility.ModelFromCsvCreator
modelLinksToJSON(Model) - Static method in class com.agenarisk.api.io.JSONAdapter
modelMetaToJSON(Model) - Static method in class com.agenarisk.api.io.JSONAdapter
modelNetworksToJSON(Model) - Static method in class com.agenarisk.api.io.JSONAdapter
modelRiskTableToJSON(Model) - Static method in class com.agenarisk.api.io.JSONAdapter
modelScenariosToJSON(Model) - Static method in class com.agenarisk.api.io.JSONAdapter
modificationLog - Enum constant in enum com.agenarisk.api.model.Network.ModificationLog
Mutual_Information - Enum constant in enum com.agenarisk.learning.structure.config.SaiyanHConfigurer.DiscrepancyType

N

name - Enum constant in enum com.agenarisk.api.io.stub.Meta.Field
name - Enum constant in enum com.agenarisk.api.io.stub.RiskTable.Answer
name - Enum constant in enum com.agenarisk.api.io.stub.RiskTable.Question
name - Enum constant in enum com.agenarisk.api.io.stub.RiskTable.Questionnaire
name - Enum constant in enum com.agenarisk.api.model.Network.Field
name - Enum constant in enum com.agenarisk.api.model.Node.Field
name - Enum constant in enum com.agenarisk.api.model.NodeConfiguration.Variables
Named - Interface in com.agenarisk.api.model.interfaces
network - Enum constant in enum com.agenarisk.api.io.stub.RiskTable.Question
network - Enum constant in enum com.agenarisk.api.model.CalculationResult.Field
network - Enum constant in enum com.agenarisk.api.model.Network.Field
network - Enum constant in enum com.agenarisk.api.model.Observation.Field
Network - Class in com.agenarisk.api.model: Network class represents an equivalent to a Risk Object in AgenaRisk Desktop or ExtendedBN in AgenaRisk Java API v1.
Network.Field - Enum in com.agenarisk.api.model: This is set of fields for input/output to XML and JSON format
Network.ModificationLog - Enum in com.agenarisk.api.model: This is set of fields for input/output to XML and JSON format
Networked<N extends Networked> - Interface in com.agenarisk.api.model.interfaces: An interface for objects that can be connected into a network of objects (e.g.
NetworkException - Exception in com.agenarisk.api.exception
NetworkException(String) - Constructor for exception com.agenarisk.api.exception.NetworkException
NetworkException(String, Throwable) - Constructor for exception com.agenarisk.api.exception.NetworkException
networks - Enum constant in enum com.agenarisk.api.model.Network.Field
node - Enum constant in enum com.agenarisk.api.io.stub.RiskTable.Question
node - Enum constant in enum com.agenarisk.api.model.CalculationResult.Field
node - Enum constant in enum com.agenarisk.api.model.Node.Field
node - Enum constant in enum com.agenarisk.api.model.Observation.Field
Node - Class in com.agenarisk.api.model: Node class represents a node in the Network.
Node.Field - Enum in com.agenarisk.api.model: This is set of fields for input/output to XML and JSON format
Node.Type - Enum in com.agenarisk.api.model: These are Node types that correspond to AgenaRisk Desktop node types
nodeConfigToJSON(ExtendedNode) - Static method in class com.agenarisk.api.io.JSONAdapter
NodeConfiguration - Class in com.agenarisk.api.model
NodeConfiguration() - Constructor for class com.agenarisk.api.model.NodeConfiguration
NodeConfiguration.Field - Enum in com.agenarisk.api.model: This is set of fields for input/output to XML and JSON format
NodeConfiguration.Percentiles - Enum in com.agenarisk.api.model: This is set of fields for input/output to XML and JSON format
NodeConfiguration.Table - Enum in com.agenarisk.api.model: This is set of fields for input/output to XML and JSON format
NodeConfiguration.TableType - Enum in com.agenarisk.api.model: This is set of fields for input/output to XML and JSON format
NodeConfiguration.Variables - Enum in com.agenarisk.api.model: This is set of fields for input/output to XML and JSON format
NodeException - Exception in com.agenarisk.api.exception
NodeException(String) - Constructor for exception com.agenarisk.api.exception.NodeException
NodeException(String, Throwable) - Constructor for exception com.agenarisk.api.exception.NodeException
NodeGraphics - Class in com.agenarisk.api.io.stub: This is a stub class that only contains field values for input/output to XML and JSON format.
NodeGraphics() - Constructor for class com.agenarisk.api.io.stub.NodeGraphics
NodeGraphics.Field - Enum in com.agenarisk.api.io.stub: This is set of fields for input/output to XML and JSON format
nodeGraphicsToJSON(ExtendedNode) - Static method in class com.agenarisk.api.io.JSONAdapter
nodeMetaToJSON(ExtendedNode) - Static method in class com.agenarisk.api.io.JSONAdapter
nodes - Enum constant in enum com.agenarisk.api.model.Node.Field
NodeStatesFromDataPopulator - Class in com.agenarisk.learning.structure.utility
NodeStatesFromDataPopulator() - Constructor for class com.agenarisk.learning.structure.utility.NodeStatesFromDataPopulator
nodeTableToJSON(ExtendedNode) - Static method in class com.agenarisk.api.io.JSONAdapter
NodeTemplate - Class in com.agenarisk.api.model
note - Enum constant in enum com.agenarisk.api.io.stub.Meta.Field
notes - Enum constant in enum com.agenarisk.api.io.stub.Meta.Field
nptCompiled - Enum constant in enum com.agenarisk.api.model.NodeConfiguration.Table
numerical - Enum constant in enum com.agenarisk.api.io.stub.RiskTable.QuestionMode

O

objectDefaults - Enum constant in enum com.agenarisk.api.io.stub.Graphics.Field
observation - Enum constant in enum com.agenarisk.api.io.stub.RiskTable.QuestionType
observation - Enum constant in enum com.agenarisk.api.model.Observation.Field
Observation - Class in com.agenarisk.api.model: Observation class is a view of an observation, valid at the time of resolution and not maintained.
Observation(Observation, DataSet, Node) - Constructor for class com.agenarisk.api.model.Observation: Constructor for the observation.
Observation.Field - Enum in com.agenarisk.api.model: This is set of fields for input/output to XML and JSON format
ObservationException - Exception in com.agenarisk.api.exception
ObservationException(String) - Constructor for exception com.agenarisk.api.exception.ObservationException
ObservationException(String, Throwable) - Constructor for exception com.agenarisk.api.exception.ObservationException
observations - Enum constant in enum com.agenarisk.api.model.Observation.Field
openMonitors - Enum constant in enum com.agenarisk.api.io.stub.Graphics.Field
OutOfMemoryException - Exception in com.agenarisk.api.exception
OutOfMemoryException(String) - Constructor for exception com.agenarisk.api.exception.OutOfMemoryException
OutOfMemoryException(String, Throwable) - Constructor for exception com.agenarisk.api.exception.OutOfMemoryException
OutOfMemoryException(Throwable) - Constructor for exception com.agenarisk.api.exception.OutOfMemoryException
output - Enum constant in enum com.agenarisk.api.model.NodeConfiguration.Field

P

paneSettings - Enum constant in enum com.agenarisk.api.io.stub.Graphics.PaneSettings
parameterLearningLogging - Enum constant in enum com.agenarisk.api.model.Settings.Field
parent - Enum constant in enum com.agenarisk.api.model.Link.Field
parseAsFunction(String, List<String>, boolean) - Method in class com.agenarisk.api.model.Node: Parses the provided expression as an ExtendedNodeFunction
partition - Enum constant in enum com.agenarisk.api.model.NodeConfiguration.Table
partitionByParents(List<Node>) - Method in class com.agenarisk.api.model.Node: Sets node partitions based on the parent states.
Partitioned - Enum constant in enum com.agenarisk.api.model.NodeConfiguration.TableType
partitions - Enum constant in enum com.agenarisk.api.model.NodeConfiguration.Table
passState - Enum constant in enum com.agenarisk.api.model.CrossNetworkLink.Field
percentile - Enum constant in enum com.agenarisk.api.io.stub.SummaryStatistic.Field
percentiles - Enum constant in enum com.agenarisk.api.model.NodeConfiguration.Field
PerformanceEvaluation - Class in com.agenarisk.learning.structure.result
PerformanceEvaluation() - Constructor for class com.agenarisk.learning.structure.result.PerformanceEvaluation
PerformanceEvaluationConfigurer - Class in com.agenarisk.learning.structure.config
PerformanceEvaluationConfigurer() - Constructor for class com.agenarisk.learning.structure.config.PerformanceEvaluationConfigurer
PerformanceEvaluationConfigurer(Config) - Constructor for class com.agenarisk.learning.structure.config.PerformanceEvaluationConfigurer
PerformanceEvaluationExecutor - Class in com.agenarisk.learning.structure.config
PerformanceEvaluationExecutor() - Constructor for class com.agenarisk.learning.structure.config.PerformanceEvaluationExecutor
PerformanceEvaluationExecutor(Config) - Constructor for class com.agenarisk.learning.structure.config.PerformanceEvaluationExecutor
picture - Enum constant in enum com.agenarisk.api.io.stub.Picture.Field
Picture - Class in com.agenarisk.api.io.stub: This is a stub class that only contains field values for input/output to XML and JSON format.
Picture() - Constructor for class com.agenarisk.api.io.stub.Picture
Picture.Field - Enum in com.agenarisk.api.io.stub: This is set of fields for input/output to XML and JSON format
pictures - Enum constant in enum com.agenarisk.api.io.stub.Picture.Field
populate(Network, Path) - Static method in class com.agenarisk.learning.structure.utility.NodeStatesFromDataPopulator
position - Enum constant in enum com.agenarisk.api.io.stub.Graphics.WindowSettings
preferredFrame - Enum constant in enum com.agenarisk.api.io.stub.Graphics.WindowSettings
preferredScreen - Enum constant in enum com.agenarisk.api.io.stub.Graphics.WindowSettings
probabilities - Enum constant in enum com.agenarisk.api.model.NodeConfiguration.Table
PrunableLearningConfigurer<T extends LearningConfigurer> - Class in com.agenarisk.learning.structure.config
PrunableLearningConfigurer() - Constructor for class com.agenarisk.learning.structure.config.PrunableLearningConfigurer
PrunableLearningConfigurer(Config) - Constructor for class com.agenarisk.learning.structure.config.PrunableLearningConfigurer
pvalues - Enum constant in enum com.agenarisk.api.model.NodeConfiguration.Table

Q

question - Enum constant in enum com.agenarisk.api.io.stub.RiskTable.Question
questionnaire - Enum constant in enum com.agenarisk.api.io.stub.RiskTable.Field
questions - Enum constant in enum com.agenarisk.api.io.stub.RiskTable.Question

R

random - Enum constant in enum com.agenarisk.learning.structure.config.GenerationConfigurer.Strategy
Ranked - Enum constant in enum com.agenarisk.api.model.Node.Type
readCsv(Path) - Static method in class com.agenarisk.api.util.CsvReader
readCsv(Path, String) - Static method in class com.agenarisk.api.util.CsvReader
readHeaders(Path) - Static method in class com.agenarisk.api.util.CsvReader
readHeaders(Path, String) - Static method in class com.agenarisk.api.util.CsvReader
readJsonArray(Path) - Static method in class com.agenarisk.api.tools.Utils: Reads contents of the path as JSONArray
readJsonObject(Path) - Static method in class com.agenarisk.api.tools.Utils: Reads contents of the path as JSONObject
regenerateNPTs() - Method in class com.agenarisk.api.model.Network: Regenerates Node NPTs in the Network, in descending order of the number of ancestors a Node has, starting from the root(s) of the Network.
Skips simulated and input nodes.
registerTempDirectory(Path) - Static method in class com.agenarisk.api.util.TempDirCleanup: Adds a directory to the collection for cleanup on shutdown if it is within the system's temp directory.
registerTempFile(File, Config) - Static method in class com.agenarisk.api.util.TempFileCleanup: Registers a temporary file for cleanup under a specific config.
removeDataSet(DataSet) - Method in class com.agenarisk.api.model.Model: Removes the provided DataSet from the model
removeLink(Link) - Method in class com.agenarisk.api.model.Node: Removes the Link object from the linksOut list.
removeNetwork(Network) - Method in class com.agenarisk.api.model.Model: Removes provided Network from this Model, breaks any existing links to and from this Network.
removeNetwork(String) - Method in class com.agenarisk.api.model.Model: Removes provided Network from this Model, breaks any existing links to and from this Network.
removeNode(Node) - Method in class com.agenarisk.api.model.Network: Removes the provided node from the model, severing its links to other Nodes and then removing it from its Network.
removeVariable(String) - Method in class com.agenarisk.api.model.Node: Removes Variable by name if it exists
reset() - Method in class com.agenarisk.api.model.Model: Reset the model by removing all Networks, Links, DataSets etc
resetNodeDataWeightsCustom() - Method in class com.agenarisk.learning.structure.config.TableLearningConfigurer
resetTable() - Method in class com.agenarisk.api.model.Node: Attempts to reset node's table
resolve(String) - Static method in class com.agenarisk.api.tools.Utils: Strips out optional double quotes enclosing this path
resolveNodeClassName(Node.Type) - Static method in class com.agenarisk.api.model.NodeConfiguration: Gets fully-qualified name for ExtendedNode concrete implementation matching the provided Node type from Note.Type.
resolveNodeType(ExtendedNode) - Static method in class com.agenarisk.api.model.NodeConfiguration: Resolves the Node Type based on the logical node.
result - Enum constant in enum com.agenarisk.api.model.CalculationResult.Field
Result - Class in com.agenarisk.learning.structure.result
Result() - Constructor for class com.agenarisk.learning.structure.result.Result
ResultInterval - Class in com.agenarisk.api.model: ResultInterval represents a range with a lower and upper boundaries with a probability mass allocated to it.
ResultInterval(CalculationResult, String, double, double, double) - Constructor for class com.agenarisk.api.model.ResultInterval: Constructor for ResultInterval.
results - Enum constant in enum com.agenarisk.api.model.CalculationResult.Field
resultsToJSON(Model, Scenario) - Static method in class com.agenarisk.api.io.JSONAdapter
resultValue - Enum constant in enum com.agenarisk.api.model.ResultValue.Field
ResultValue - Class in com.agenarisk.api.model: ResultValue represents a state or range with probability mass allocated to it.
ResultValue(CalculationResult, String, double) - Constructor for class com.agenarisk.api.model.ResultValue: Constructor for ResultValue.
ResultValue.Field - Enum in com.agenarisk.api.model: This is set of fields for input/output to XML and JSON format
resultValues - Enum constant in enum com.agenarisk.api.model.ResultValue.Field
rightPaneExpanded - Enum constant in enum com.agenarisk.api.io.stub.Graphics.PaneSettings
riskTable - Enum constant in enum com.agenarisk.api.io.stub.RiskTable.Field
RiskTable - Class in com.agenarisk.api.io.stub: This is a stub class that only contains field values for input/output to XML and JSON format.
RiskTable() - Constructor for class com.agenarisk.api.io.stub.RiskTable
RiskTable.Answer - Enum in com.agenarisk.api.io.stub: This is set of fields for input/output to XML and JSON format
RiskTable.Field - Enum in com.agenarisk.api.io.stub: This is set of fields for input/output to XML and JSON format
RiskTable.Question - Enum in com.agenarisk.api.io.stub: This is set of fields for input/output to XML and JSON format
RiskTable.QuestionMode - Enum in com.agenarisk.api.io.stub: This is set of fields for input/output to XML and JSON format
RiskTable.Questionnaire - Enum in com.agenarisk.api.io.stub: This is set of fields for input/output to XML and JSON format
RiskTable.QuestionType - Enum in com.agenarisk.api.io.stub: This is set of fields for input/output to XML and JSON format
row - Enum constant in enum com.agenarisk.api.model.NodeConfiguration.Table

S

SaiyanHConfigurer - Class in com.agenarisk.learning.structure.config
SaiyanHConfigurer() - Constructor for class com.agenarisk.learning.structure.config.SaiyanHConfigurer
SaiyanHConfigurer(Config) - Constructor for class com.agenarisk.learning.structure.config.SaiyanHConfigurer
SaiyanHConfigurer.DiscrepancyType - Enum in com.agenarisk.learning.structure.config: Score and distance derived from single type
sampleSizeRanked - Enum constant in enum com.agenarisk.api.model.Settings.Field
save(String) - Method in class com.agenarisk.api.model.Model: Saves the Model to a file path specified.
Output format is determined by path extension:
• AgenaRisk 7 CMP for "cmp"
• XML for "xml"
• JSON for everything else
saveEssentials(String, boolean) - Method in class com.agenarisk.api.model.Model: Saves the Model as a light-weight JSON.
Keeps only elements essential for a clean calculation.
Drops: Graphics, RiskTable, DataSets, compiled non-manual NPTs, names, notes and descriptions.
savingTo(String) - Method in class com.agenarisk.api.tools.calculator.Calculator
savingTo(String) - Method in class com.agenarisk.api.tools.sensitivity.Sensitivity
scenarioPaneExpanded - Enum constant in enum com.agenarisk.api.io.stub.Graphics.PaneSettings
scenarioToJSON(Model, Scenario) - Static method in class com.agenarisk.api.io.JSONAdapter
screenId - Enum constant in enum com.agenarisk.api.io.stub.Graphics.WindowSettings
selectedRiskObject - Enum constant in enum com.agenarisk.api.io.stub.Graphics.PaneSettings
selection - Enum constant in enum com.agenarisk.api.io.stub.RiskTable.QuestionMode
Sensitivity - Class in com.agenarisk.api.tools.sensitivity: This class is for CLI API interface to enable calculations without using the Java API and relying on CLI invocation only
Sensitivity() - Constructor for class com.agenarisk.api.tools.sensitivity.Sensitivity
SensitivityAnalyser - Class in com.agenarisk.api.tools: SensitivityAnalyser performs sensitivity analysis of the model for the provided target and sensitivity Nodes.
The input is a JSON configuration.
SensitivityAnalyser(Model, JSONObject) - Constructor for class com.agenarisk.api.tools.SensitivityAnalyser: Constructor for Sensitivity Analysis tool.
The Model will be factorised and converted to static taking into account any overriding model settings and observations pre-entered into the selected DataSet.
If no DataSet or Network are specified, the first one of each will be used.
SensitivityAnalyserException - Exception in com.agenarisk.api.tools
SensitivityAnalyserException() - Constructor for exception com.agenarisk.api.tools.SensitivityAnalyserException
SensitivityAnalyserException(String) - Constructor for exception com.agenarisk.api.tools.SensitivityAnalyserException
SensitivityAnalyserException(String, Throwable) - Constructor for exception com.agenarisk.api.tools.SensitivityAnalyserException
SensitivityAnalyserException(Throwable) - Constructor for exception com.agenarisk.api.tools.SensitivityAnalyserException
SensitivityException - Exception in com.agenarisk.api.tools.sensitivity
SensitivityException() - Constructor for exception com.agenarisk.api.tools.sensitivity.SensitivityException
SensitivityException(String) - Constructor for exception com.agenarisk.api.tools.sensitivity.SensitivityException
SensitivityException(String, Throwable) - Constructor for exception com.agenarisk.api.tools.sensitivity.SensitivityException
SensitivityException(Throwable) - Constructor for exception com.agenarisk.api.tools.sensitivity.SensitivityException
setAbsoluteError(double) - Method in class com.agenarisk.learning.structure.result.PerformanceEvaluation
setAlgorithm(String) - Method in class com.agenarisk.learning.structure.result.Discovery
setAllVariablesRelevant(Boolean) - Method in class com.agenarisk.learning.structure.config.KnowledgeConfigurer: If set, all variables in the training data must be connected within the same graph and no disjointed variables are allowed
setAverage(boolean) - Method in class com.agenarisk.learning.structure.result.Discovery
setBicLog(String) - Method in class com.agenarisk.learning.structure.config.BicLogConfigurer: Allowed values: 2, 10, e
setBicScore(double) - Method in class com.agenarisk.learning.structure.result.StructureEvaluation
setBrierScore(double) - Method in class com.agenarisk.learning.structure.result.PerformanceEvaluation
setComplexityScore(double) - Method in class com.agenarisk.learning.structure.result.StructureEvaluation
setConstraintsBDN(Boolean) - Method in class com.agenarisk.learning.structure.config.KnowledgeConfigurer
setConstraintsBDNGuarantee(Boolean) - Method in class com.agenarisk.learning.structure.config.KnowledgeConfigurer
setConstraintsDirectedEnabled(Boolean) - Method in class com.agenarisk.learning.structure.config.KnowledgeConfigurer
setConstraintsForbiddenEnabled(Boolean) - Method in class com.agenarisk.learning.structure.config.KnowledgeConfigurer
setConstraintsInitialGraph(Boolean) - Method in class com.agenarisk.learning.structure.config.KnowledgeConfigurer
setConstraintsProhibitEdgesSameTemporalTier(Boolean) - Method in class com.agenarisk.learning.structure.config.KnowledgeConfigurer
setConstraintsTargetPenaltyReductionRate(int) - Method in class com.agenarisk.learning.structure.config.KnowledgeConfigurer
setConstraintsTargetPenaltyReductionRateEnabled(Boolean) - Method in class com.agenarisk.learning.structure.config.KnowledgeConfigurer
setConstraintsTemporalEnabled(Boolean) - Method in class com.agenarisk.learning.structure.config.KnowledgeConfigurer
setConstraintsUndirectedEnabled(Boolean) - Method in class com.agenarisk.learning.structure.config.KnowledgeConfigurer
setConvergence(double) - Method in class com.agenarisk.api.model.Settings: Sets simulation entropy error convergence threshold
setCustomKnowledgeEnabled(Boolean) - Method in class com.agenarisk.learning.structure.config.KnowledgeConfigurer
setCustomPercentileSettings(double, double) - Method in class com.agenarisk.api.model.Node
setData(ArrayList<ArrayList<String>>) - Method in class com.agenarisk.learning.structure.execution.ConfiguredExecutor
setDataFilePath(Path) - Method in class com.agenarisk.learning.structure.execution.ConfiguredExecutor
setDataPath(Path) - Method in class com.agenarisk.learning.structure.config.PerformanceEvaluationConfigurer
setDefaultIntervalStates(Node) - Static method in class com.agenarisk.api.model.NodeConfiguration: Replaces Node states with 3 default interval states.
setDescription(String) - Method in interface com.agenarisk.api.model.interfaces.Named: Sets the description of this Named object.
setDescription(String) - Method in class com.agenarisk.api.model.Network: Sets the description of this Network.
setDescription(String) - Method in class com.agenarisk.api.model.Node: Sets the description of this Node.
setDiscrepancyType(SaiyanHConfigurer.DiscrepancyType) - Method in class com.agenarisk.learning.structure.config.SaiyanHConfigurer: Sets Maximum Mean Discrepancy (MMD) type and Score and Distance types respectively
setDiscretizeTails(boolean) - Method in class com.agenarisk.api.model.Settings: Sets whether tails are discretized during simulated calculation.
setFileInputTrainingDataCsv(String) - Method in class com.agenarisk.learning.structure.config.EvaluationExecutor: If set, will override any previous data passed as JSON
setFileInputTrainingDataCsv(String) - Method in class com.agenarisk.learning.structure.config.StructureLearnerExecutor: If set, will override any previous data passed as JSON
setFileOutputCmp(String) - Method in class com.agenarisk.learning.structure.config.EvaluationExecutor: If set, will override any previous data passed as JSON
setFileOutputCmp(String) - Method in class com.agenarisk.learning.structure.config.StructureLearnerExecutor: If set, the file at provided path will not be deleted upon exit and can be used for debugging
setFreeParameters(long) - Method in class com.agenarisk.learning.structure.result.StructureEvaluation
setGraphics(JSONObject) - Method in class com.agenarisk.api.model.Link: Stores Link's graphics.
setId(String) - Method in class com.agenarisk.api.model.DataSet: Changes the ID of this Network to the provided ID, if the new ID is not already taken.
setId(String) - Method in interface com.agenarisk.api.model.interfaces.Identifiable: Changes the ID of the object.
setId(String) - Method in class com.agenarisk.api.model.Network: Changes the ID of this Network to the provided ID, if the new ID is not already taken.
setId(String) - Method in class com.agenarisk.api.model.Node: Changes the ID of this Node to the provided ID, if the new ID is not already taken.
setId(String) - Method in class com.agenarisk.api.model.NodeTemplate
setInputDirPath(Path) - Method in class com.agenarisk.learning.structure.config.MergerConfigurer
setInputDirPath(Path) - Method in class com.agenarisk.learning.structure.execution.ConfiguredExecutor
setIterations(int) - Method in class com.agenarisk.api.model.Settings: Sets maximum number of iterations during model calculation.
setLabel(String) - Method in class com.agenarisk.learning.structure.result.Discovery
setLabel(String) - Method in class com.agenarisk.learning.structure.result.PerformanceEvaluation
setLabel(String) - Method in class com.agenarisk.learning.structure.result.StructureEvaluation
setLoggingEnabled(boolean) - Method in class com.agenarisk.learning.structure.config.Configurer
setLoggingEnabled(boolean) - Method in interface com.agenarisk.learning.structure.config.Loggable
setLogicModel(Model) - Method in class com.agenarisk.api.model.Model: Links this Model to an underlying Minerva Model object.
setLogicNetwork(ExtendedBN) - Method in class com.agenarisk.api.model.Network: Links this Network to an underlying Minerva Network object.
setLogicNode(ExtendedNode) - Method in class com.agenarisk.api.model.Node: Links this Node to an underlying Minerva Node object.
setLogicScenario(Scenario) - Method in class com.agenarisk.api.model.DataSet: Links this Network to an underlying Minerva Network object.
setLogicState(ExtendedState) - Method in class com.agenarisk.api.model.State: Links this State to an underlying API1 State object.
setLogLikelihoodScore(double) - Method in class com.agenarisk.learning.structure.result.StructureEvaluation
setMacroAuc(double) - Method in class com.agenarisk.learning.structure.result.PerformanceEvaluation
setMaxInDegreePreProcessing(int) - Method in class com.agenarisk.learning.structure.config.MahcConfigurer
setMessage(String) - Method in class com.agenarisk.learning.structure.result.Discovery
setMessage(String) - Method in class com.agenarisk.learning.structure.result.PerformanceEvaluation
setMessage(String) - Method in class com.agenarisk.learning.structure.result.StructureEvaluation
setMicroAuc(double) - Method in class com.agenarisk.learning.structure.result.PerformanceEvaluation
setModel(Model) - Method in class com.agenarisk.learning.structure.config.GenerationConfigurer
setModel(Model) - Method in class com.agenarisk.learning.structure.config.MergerConfigurer
setModel(Model) - Method in class com.agenarisk.learning.structure.config.TableLearningConfigurer
setModel(JSONObject) - Method in class com.agenarisk.learning.structure.result.Discovery
setModelFilePrefix(String) - Method in class com.agenarisk.learning.structure.result.Discovery
setModelLabel(String) - Method in class com.agenarisk.learning.structure.result.PerformanceEvaluation
setModelLabel(String) - Method in class com.agenarisk.learning.structure.result.StructureEvaluation
setModelPath(String) - Method in class com.agenarisk.learning.structure.result.Discovery
setModelPath(Path) - Method in class com.agenarisk.learning.structure.config.GenerationConfigurer
setModelPath(Path) - Method in class com.agenarisk.learning.structure.config.TableLearningConfigurer
setModelPrefix(String) - Method in class com.agenarisk.learning.structure.config.MergerConfigurer
setModelPrefix(String) - Method in class com.agenarisk.learning.structure.config.TableLearningConfigurer
setModelPrefixes(Map<String, String>) - Method in class com.agenarisk.learning.structure.config.MergerConfigurer
setModelPrefixes(Map<String, String>) - Method in class com.agenarisk.learning.structure.config.PerformanceEvaluationConfigurer
setModelStageLabel(String) - Method in class com.agenarisk.learning.structure.config.TableLearningConfigurer
setName(String) - Method in interface com.agenarisk.api.model.interfaces.Named: Sets the name of this Named object.
setName(String) - Method in class com.agenarisk.api.model.Network: Sets the name of this Network.
setName(String) - Method in class com.agenarisk.api.model.Node: Sets the name of this Node.
setName(String) - Method in class com.agenarisk.api.model.NodeTemplate
setName(String) - Method in class com.agenarisk.api.model.Variable: Change the name of the Variable to the provided new name.
Will also update formulas, expressions etc.
setNodeType(Node.Type) - Method in class com.agenarisk.api.model.NodeTemplate
setNPTColumns(double[][]) - Method in class com.agenarisk.api.model.NodeTemplate
setNPTRows(Double[][]) - Method in class com.agenarisk.api.model.NodeTemplate
setObservation(Node, Object) - Method in class com.agenarisk.api.model.DataSet: Sets a hard observation for a Node.
setObservation(JSONObject) - Method in class com.agenarisk.api.model.DataSet: Sets observations according to the given JSON.
setObservationConstant(Node, String, double) - Method in class com.agenarisk.api.model.DataSet: Sets a node constant observation for a Node.
setObservationHard(Node, double) - Method in class com.agenarisk.api.model.DataSet: Sets a hard real observation for a Node.
setObservationHard(Node, int) - Method in class com.agenarisk.api.model.DataSet: Sets a hard integer observation for a Node.
setObservationHard(Node, String) - Method in class com.agenarisk.api.model.DataSet: Sets a hard observation for a Node.
setObservationSoft(Node, String[], Double[]) - Method in class com.agenarisk.api.model.DataSet: Sets a soft observation for the node, assigning a given weights to given states.
setObservationSoft(Node, Map<String, Double>) - Method in class com.agenarisk.api.model.DataSet: Sets a soft observation for the node, assigning a given weights to given states.
setOriginalConfigurer(GenerationConfigurer) - Method in class com.agenarisk.learning.structure.config.GenerationExecutor
setOriginalConfigurer(MergerConfigurer) - Method in class com.agenarisk.learning.structure.config.MergerExecutor
setOriginalConfigurer(PerformanceEvaluationConfigurer) - Method in class com.agenarisk.learning.structure.config.PerformanceEvaluationExecutor
setOriginalConfigurer(TableLearningConfigurer) - Method in class com.agenarisk.learning.structure.config.TableLearningExecutor
setOutputDirPath(Path) - Method in class com.agenarisk.learning.structure.config.MergerConfigurer
setOutputDirPath(Path) - Method in class com.agenarisk.learning.structure.config.PerformanceEvaluationConfigurer
setOutputDirPath(Path) - Method in class com.agenarisk.learning.structure.execution.ConfiguredExecutor
setPipelineResult(Result) - Method in class com.agenarisk.learning.structure.config.PerformanceEvaluationConfigurer
setPruningLevel(int) - Method in class com.agenarisk.learning.structure.config.PrunableLearningConfigurer: Level 0: No pruning
Level 1: Parent-sets of size 1 vs.
setSampleSize(int) - Method in class com.agenarisk.api.model.Settings: Sets ranked node sample size.
setSaveAssociationalScores(boolean) - Method in class com.agenarisk.learning.structure.config.SaiyanHConfigurer: If set, will save association scores to config.getPathOutput()/SaiyanH/marginalDep.csv
setSphericalScore(double) - Method in class com.agenarisk.learning.structure.result.PerformanceEvaluation
setStageIndex(int) - Method in class com.agenarisk.learning.structure.config.PerformanceEvaluationExecutor
setStageLabel(String) - Method in class com.agenarisk.learning.structure.config.PerformanceEvaluationConfigurer
setStates(String[]) - Method in class com.agenarisk.api.model.Node: Replaces Node's states by the ones given in the array.
setStates(String[]) - Method in class com.agenarisk.api.model.NodeTemplate
setStates(List<String>) - Method in class com.agenarisk.api.model.Node: Replaces Node's states by the ones given in the array.
setStates(List<String>) - Method in class com.agenarisk.api.model.NodeTemplate
setStates(JSONArray) - Method in class com.agenarisk.api.model.Node: Replaces Node's states by the ones given in the JSON array.
setSuccess(boolean) - Method in class com.agenarisk.learning.structure.result.Discovery
setSuccess(boolean) - Method in class com.agenarisk.learning.structure.result.PerformanceEvaluation
setSuccess(boolean) - Method in class com.agenarisk.learning.structure.result.StructureEvaluation
setTable(JSONObject) - Method in class com.agenarisk.api.model.Node: Replaces the Node's probability table with one specified in the given JSON.
setTableColumns(double[][]) - Method in class com.agenarisk.api.model.Node: Sets the manual NPT according to columns provided.
setTableFunction(String) - Method in class com.agenarisk.api.model.Node: Sets Node function to the one provided.
setTableFunction(String, List<String>) - Method in class com.agenarisk.api.model.Node: Sets Node function to the one provided.
setTableFunction(String, List<String>, boolean) - Method in class com.agenarisk.api.model.Node: Sets Node function to the one provided.
setTableFunctions(List<String>, List<Node>) - Method in class com.agenarisk.api.model.Node: Sets Node expressions to the ones provided.
setTableFunctions(List<String>, List<String>, boolean, List<Node>) - Method in class com.agenarisk.api.model.Node: Sets Node expressions to the ones provided.
setTableRows(double[][]) - Method in class com.agenarisk.api.model.Node: Sets the manual NPT according to rows provided.
setTableType(NodeConfiguration.TableType) - Method in class com.agenarisk.api.model.NodeTemplate
setTableUniform() - Method in class com.agenarisk.api.model.Node: Resets the node NPT to a uniform table.
settings - Enum constant in enum com.agenarisk.api.model.Settings.Field
Settings - Class in com.agenarisk.api.model: This is a class for Model calculation settings.
Settings(Model) - Constructor for class com.agenarisk.api.model.Settings
Settings.Field - Enum in com.agenarisk.api.model: This is set of fields for input/output to XML and JSON format
setTolerance(double) - Method in class com.agenarisk.api.model.Settings: Sets simulation evidence tolerance percent.
setValue(double) - Method in class com.agenarisk.api.model.Variable: Change the default value of the Variable to the provided new value.
setVariableObservation(Node, String, double) - Method in class com.agenarisk.api.model.DataSet: Sets a value for the provided variable in the provided Node in this DataSet to override its default value
simulated - Enum constant in enum com.agenarisk.api.model.NodeConfiguration.Field
simulationConvergence - Enum constant in enum com.agenarisk.api.model.NodeConfiguration.Field
simulationLogging - Enum constant in enum com.agenarisk.api.model.Settings.Field
size - Enum constant in enum com.agenarisk.api.io.stub.Graphics.WindowSettings
SkipTableRegeneration - Enum constant in enum com.agenarisk.api.model.Model.ConversionFlag: Skips regenerating tables in the Core
sourceNetwork - Enum constant in enum com.agenarisk.api.model.CrossNetworkLink.Field
sourceNode - Enum constant in enum com.agenarisk.api.model.CrossNetworkLink.Field
standardDeviation - Enum constant in enum com.agenarisk.api.io.stub.SummaryStatistic.Field
StandardDeviation - Enum constant in enum com.agenarisk.api.model.CrossNetworkLink.Type
state - Enum constant in enum com.agenarisk.api.io.stub.RiskTable.Answer
state - Enum constant in enum com.agenarisk.api.model.State.Field
State - Class in com.agenarisk.api.model: Node class corresponds to a State in AgenaRisk Desktop or ExtendedState in AgenaRisk Java API v1.
State - Enum constant in enum com.agenarisk.api.model.CrossNetworkLink.Type
State.Field - Enum in com.agenarisk.api.model: This is set of fields for input/output to XML and JSON format
StateException - Exception in com.agenarisk.api.exception
StateException(String) - Constructor for exception com.agenarisk.api.exception.StateException
StateException(String, Throwable) - Constructor for exception com.agenarisk.api.exception.StateException
states - Enum constant in enum com.agenarisk.api.model.State.Field
Storable - Interface in com.agenarisk.api.model.interfaces: Classes that will be stored in a JSON format should implement this.
StructureEvaluation - Class in com.agenarisk.learning.structure.result
StructureEvaluation() - Constructor for class com.agenarisk.learning.structure.result.StructureEvaluation
StructureLearner - Class in com.agenarisk.learning.structure
StructureLearner() - Constructor for class com.agenarisk.learning.structure.StructureLearner
StructureLearnerExecutor - Class in com.agenarisk.learning.structure.config
StructureLearnerExecutor() - Constructor for class com.agenarisk.learning.structure.config.StructureLearnerExecutor
StructureLearnerExecutor(Config) - Constructor for class com.agenarisk.learning.structure.config.StructureLearnerExecutor
SummaryStatistic - Class in com.agenarisk.api.io.stub: This is a stub class that only contains field values for input/output to XML and JSON format.
SummaryStatistic() - Constructor for class com.agenarisk.api.io.stub.SummaryStatistic
SummaryStatistic.Field - Enum in com.agenarisk.api.io.stub: This is set of fields for input/output to XML and JSON format
summaryStatistics - Enum constant in enum com.agenarisk.api.io.stub.SummaryStatistic.Field
syncName - Enum constant in enum com.agenarisk.api.io.stub.RiskTable.Question

T

table - Enum constant in enum com.agenarisk.api.model.NodeConfiguration.Table
tableLearning - Enum constant in enum com.agenarisk.learning.structure.execution.ConfiguredExecutor.Stage
TableLearningConfigurer - Class in com.agenarisk.learning.structure.config
TableLearningConfigurer() - Constructor for class com.agenarisk.learning.structure.config.TableLearningConfigurer
TableLearningConfigurer(Config) - Constructor for class com.agenarisk.learning.structure.config.TableLearningConfigurer
TableLearningExecutor - Class in com.agenarisk.learning.structure.config
TableLearningExecutor() - Constructor for class com.agenarisk.learning.structure.config.TableLearningExecutor
TableLearningExecutor(Config) - Constructor for class com.agenarisk.learning.structure.config.TableLearningExecutor
TabuConfigurer - Class in com.agenarisk.learning.structure.config
TabuConfigurer() - Constructor for class com.agenarisk.learning.structure.config.TabuConfigurer
TabuConfigurer(Config) - Constructor for class com.agenarisk.learning.structure.config.TabuConfigurer
targetNetwork - Enum constant in enum com.agenarisk.api.model.CrossNetworkLink.Field
targetNode - Enum constant in enum com.agenarisk.api.model.CrossNetworkLink.Field
TempDirCleanup - Class in com.agenarisk.api.util
TempDirCleanup() - Constructor for class com.agenarisk.api.util.TempDirCleanup
TempFileCleanup - Class in com.agenarisk.api.util
TempFileCleanup() - Constructor for class com.agenarisk.api.util.TempFileCleanup
text - Enum constant in enum com.agenarisk.api.io.stub.Meta.Field
text - Enum constant in enum com.agenarisk.api.io.stub.Text.Field
Text - Class in com.agenarisk.api.io.stub: This is a stub class that only contains field values for input/output to XML and JSON format.
Text() - Constructor for class com.agenarisk.api.io.stub.Text
Text.Field - Enum in com.agenarisk.api.io.stub: This is set of fields for input/output to XML and JSON format
texts - Enum constant in enum com.agenarisk.api.io.stub.Text.Field
throwIdExistsException(String) - Method in interface com.agenarisk.api.model.interfaces.IdContainer: Throws an Exception with message e.g.
throwIdExistsException(String) - Method in class com.agenarisk.api.model.Model: Deprecated.
For internal use only
throwIdExistsException(String) - Method in class com.agenarisk.api.model.Network: Deprecated.
For internal use only
throwOldIdNullException(String) - Method in interface com.agenarisk.api.model.interfaces.IdContainer: Throws an Exception with message e.g.
throwOldIdNullException(String) - Method in class com.agenarisk.api.model.Model: Deprecated.
For internal use only
throwOldIdNullException(String) - Method in class com.agenarisk.api.model.Network: Deprecated.
For internal use only
toJson() - Method in class com.agenarisk.api.model.CalculationResult: Returns a JSON representation of this object.
toJson() - Method in class com.agenarisk.api.model.CrossNetworkLink: Creates a JSON representing this Link, ready for file storage.
toJson() - Method in class com.agenarisk.api.model.DataSet: Creates a JSONObject representation of this DataSet
toJson() - Method in interface com.agenarisk.api.model.interfaces.Storable: Builds a JSONObject representation of this object.
toJson() - Method in class com.agenarisk.api.model.Link: Creates a JSON representing this Link, ready for file storage.
toJson() - Method in class com.agenarisk.api.model.Model: Creates a JSON representing this Network, ready for file storage.
toJson() - Method in class com.agenarisk.api.model.Network: Creates a JSON representing this Network, ready for file storage.
toJson() - Method in class com.agenarisk.api.model.Node: Creates a JSON representing this Node, ready for file storage.
toJson() - Method in class com.agenarisk.api.model.Observation: Creates a JSONObject representation of this Observation.
toJson() - Method in class com.agenarisk.api.model.ResultValue: Returns a JSON representation of this object.
toJson() - Method in class com.agenarisk.api.model.Settings: Returns a JSON representation of the Model settings.
toJson() - Method in class com.agenarisk.api.model.VariableObservation: Creates a JSONObject representation of this Observation.
toJson() - Method in class com.agenarisk.learning.structure.result.Discovery
toJson() - Method in class com.agenarisk.learning.structure.result.PerformanceEvaluation
toJson() - Method in class com.agenarisk.learning.structure.result.Result
toJson() - Method in class com.agenarisk.learning.structure.result.StructureEvaluation
toJson(Model) - Static method in class com.agenarisk.api.model.Settings: Utility method to build a JSON equivalent of settings from the provided API1 model
toJSONObject(Object[][]) - Static method in class com.agenarisk.api.util.JSONUtils: Converts a 2D Object array into a JSONObject.
toJSONObject(ExtendedBN) - Static method in class com.agenarisk.api.io.JSONAdapter
toJSONObject(ExtendedNode) - Static method in class com.agenarisk.api.io.JSONAdapter
toJSONObject(Model) - Static method in class com.agenarisk.api.io.JSONAdapter
tolerance - Enum constant in enum com.agenarisk.api.model.Settings.Field
toList(JSONArray, Class<T>) - Static method in class com.agenarisk.api.util.JSONUtils: Converts JSONArray to a List of provided type.
toString() - Method in class com.agenarisk.api.model.CalculationResult: Returns a String value of the JSON representation of this object.
toString() - Method in class com.agenarisk.api.model.field.Id: Returns the string representation of this ID which is its value.
toString() - Method in class com.agenarisk.api.model.Link: Returns toStringExtra().
toString() - Method in class com.agenarisk.api.model.Network: Returns toStringExtra().
toString() - Method in class com.agenarisk.api.model.Node: Returns JSON equivalent of this Node as a String.
toString() - Method in class com.agenarisk.api.model.Observation: Returns a JSON String representing this Observation.
toString() - Method in class com.agenarisk.api.model.ResultValue: Returns a String value of the JSON representation of this object.
toString() - Method in class com.agenarisk.api.model.State
toString(int) - Method in class com.agenarisk.api.model.CalculationResult: Returns a String value of the JSON representation of this object.
toStringExtra() - Method in class com.agenarisk.api.model.Link: Returns the string representation of the Link as: `Net1`.`Node1` → `Net2`.`Node2`.
toStringExtra() - Method in class com.agenarisk.api.model.Network: Returns the ID of the underlying network surrounded by back ticks.
toStringExtra() - Method in class com.agenarisk.api.model.Node: Returns `network`.`node` String representing this Node.
toXMLString(Object) - Static method in class com.agenarisk.api.io.XMLAdapter: Converts a JSON AgenaRisk 10 model to its XML representation.
toXMLString(Object, String) - Static method in class com.agenarisk.api.io.XMLAdapter: Converts an object to its XML representation.
transposeMatrix(double[][]) - Static method in class com.agenarisk.api.model.NodeConfiguration: Transposes the provided 2D matrix.
traverse(Object, Consumer<Object>) - Static method in class com.agenarisk.api.util.JSONUtils: Applies the provided action to the provided object.
type - Enum constant in enum com.agenarisk.api.io.stub.RiskTable.Question
type - Enum constant in enum com.agenarisk.api.model.CrossNetworkLink.Field
type - Enum constant in enum com.agenarisk.api.model.NodeConfiguration.Field
type - Enum constant in enum com.agenarisk.api.model.NodeConfiguration.Table

U

unanswerable - Enum constant in enum com.agenarisk.api.io.stub.RiskTable.QuestionMode
unlink(Network) - Method in class com.agenarisk.api.model.Network: Removes all links (if any exist) between the two networks.
unlink(Node) - Method in class com.agenarisk.api.model.Node: Removes a link between this Node and the linkedNode, if such link exists.
unlink(N) - Method in interface com.agenarisk.api.model.interfaces.Networked: Breaks the Link between this Networked object and the one provided, regardless of which one is the parent and which is the child.
unlinkNodes(Node, Node) - Static method in class com.agenarisk.api.model.Node: Checks that there is a Link between two nodes and destroys it.
unlinkThread(Thread) - Method in class com.agenarisk.api.util.Advisory.AdvisoryGroup: Unlinks provided Thread from this AdvisoryGroup
upperPercentile - Enum constant in enum com.agenarisk.api.io.stub.SummaryStatistic.Field
upperPercentile - Enum constant in enum com.agenarisk.api.model.NodeConfiguration.Percentiles
UpperPercentile - Enum constant in enum com.agenarisk.api.model.CrossNetworkLink.Type
user - Enum constant in enum com.agenarisk.api.io.stub.Audit.Field
usingCache(boolean) - Method in class com.agenarisk.api.tools.calculator.Calculator
Utils - Class in com.agenarisk.api.tools
Utils() - Constructor for class com.agenarisk.api.tools.Utils

V

value - Enum constant in enum com.agenarisk.api.model.NodeConfiguration.Variables
value - Enum constant in enum com.agenarisk.api.model.Observation.Field
value - Enum constant in enum com.agenarisk.api.model.ResultValue.Field
valueOf(String) - Static method in enum com.agenarisk.api.io.stub.Audit.Field: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.agenarisk.api.io.stub.Graphics.CanvasData: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.agenarisk.api.io.stub.Graphics.Field: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.agenarisk.api.io.stub.Graphics.Images: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.agenarisk.api.io.stub.Graphics.PaneSettings: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.agenarisk.api.io.stub.Graphics.WindowSettings: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.agenarisk.api.io.stub.Meta.Field: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.agenarisk.api.io.stub.NodeGraphics.Field: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.agenarisk.api.io.stub.Picture.Field: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.agenarisk.api.io.stub.RiskTable.Answer: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.agenarisk.api.io.stub.RiskTable.Field: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.agenarisk.api.io.stub.RiskTable.Question: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.agenarisk.api.io.stub.RiskTable.QuestionMode: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.agenarisk.api.io.stub.RiskTable.Questionnaire: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.agenarisk.api.io.stub.RiskTable.QuestionType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.agenarisk.api.io.stub.SummaryStatistic.Field: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.agenarisk.api.io.stub.Text.Field: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.agenarisk.api.model.CalculationResult.Field: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.agenarisk.api.model.CrossNetworkLink.Field: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.agenarisk.api.model.CrossNetworkLink.Type: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.agenarisk.api.model.DataSet.Field: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.agenarisk.api.model.Link.Field: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.agenarisk.api.model.Model.CalculationFlag: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.agenarisk.api.model.Model.ConversionFlag: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.agenarisk.api.model.Model.ExportFlag: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.agenarisk.api.model.Model.Field: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.agenarisk.api.model.Network.Field: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.agenarisk.api.model.Network.ModificationLog: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.agenarisk.api.model.Node.Field: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.agenarisk.api.model.Node.Type: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.agenarisk.api.model.NodeConfiguration.Field: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.agenarisk.api.model.NodeConfiguration.Percentiles: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.agenarisk.api.model.NodeConfiguration.Table: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.agenarisk.api.model.NodeConfiguration.TableType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.agenarisk.api.model.NodeConfiguration.Variables: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.agenarisk.api.model.Observation.Field: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.agenarisk.api.model.ResultValue.Field: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.agenarisk.api.model.Settings.Field: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.agenarisk.api.model.State.Field: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.agenarisk.learning.structure.config.GenerationConfigurer.Strategy: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.agenarisk.learning.structure.config.SaiyanHConfigurer.DiscrepancyType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum com.agenarisk.learning.structure.execution.ConfiguredExecutor.Stage: Returns the enum constant of this type with the specified name.
values() - Static method in enum com.agenarisk.api.io.stub.Audit.Field: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.agenarisk.api.io.stub.Graphics.CanvasData: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.agenarisk.api.io.stub.Graphics.Field: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.agenarisk.api.io.stub.Graphics.Images: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.agenarisk.api.io.stub.Graphics.PaneSettings: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.agenarisk.api.io.stub.Graphics.WindowSettings: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.agenarisk.api.io.stub.Meta.Field: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.agenarisk.api.io.stub.NodeGraphics.Field: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.agenarisk.api.io.stub.Picture.Field: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.agenarisk.api.io.stub.RiskTable.Answer: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.agenarisk.api.io.stub.RiskTable.Field: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.agenarisk.api.io.stub.RiskTable.Question: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.agenarisk.api.io.stub.RiskTable.QuestionMode: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.agenarisk.api.io.stub.RiskTable.Questionnaire: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.agenarisk.api.io.stub.RiskTable.QuestionType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.agenarisk.api.io.stub.SummaryStatistic.Field: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.agenarisk.api.io.stub.Text.Field: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.agenarisk.api.model.CalculationResult.Field: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.agenarisk.api.model.CrossNetworkLink.Field: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.agenarisk.api.model.CrossNetworkLink.Type: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.agenarisk.api.model.DataSet.Field: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.agenarisk.api.model.Link.Field: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.agenarisk.api.model.Model.CalculationFlag: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.agenarisk.api.model.Model.ConversionFlag: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.agenarisk.api.model.Model.ExportFlag: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.agenarisk.api.model.Model.Field: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.agenarisk.api.model.Network.Field: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.agenarisk.api.model.Network.ModificationLog: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.agenarisk.api.model.Node.Field: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.agenarisk.api.model.Node.Type: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.agenarisk.api.model.NodeConfiguration.Field: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.agenarisk.api.model.NodeConfiguration.Percentiles: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.agenarisk.api.model.NodeConfiguration.Table: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.agenarisk.api.model.NodeConfiguration.TableType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.agenarisk.api.model.NodeConfiguration.Variables: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.agenarisk.api.model.Observation.Field: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.agenarisk.api.model.ResultValue.Field: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.agenarisk.api.model.Settings.Field: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.agenarisk.api.model.State.Field: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.agenarisk.learning.structure.config.GenerationConfigurer.Strategy: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.agenarisk.learning.structure.config.SaiyanHConfigurer.DiscrepancyType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum com.agenarisk.learning.structure.execution.ConfiguredExecutor.Stage: Returns an array containing the constants of this enum type, in the order they are declared.
variable - Enum constant in enum com.agenarisk.api.model.NodeConfiguration.Variables
Variable - Class in com.agenarisk.api.model
Variable(Node, Variable) - Constructor for class com.agenarisk.api.model.Variable: Creates an instance of Variable for the provided Node, linked to the provided logic Variable.
VariableObservation - Class in com.agenarisk.api.model: VariableObservation class is a view of a node variable observation, valid at the time of resolution and not maintained.
VariableObservation(Observation, DataSet, Node) - Constructor for class com.agenarisk.api.model.VariableObservation: Constructor for VariableObservation.
variables - Enum constant in enum com.agenarisk.api.model.NodeConfiguration.Variables
variance - Enum constant in enum com.agenarisk.api.io.stub.SummaryStatistic.Field
Variance - Enum constant in enum com.agenarisk.api.model.CrossNetworkLink.Type
version - Enum constant in enum com.agenarisk.api.model.Model.Field
VersionApi - Class in com.agenarisk.api.util: This class provides means to retrieve the version of this build from manifest or .properties
VersionApi() - Constructor for class com.agenarisk.api.util.VersionApi
viewSettings - Enum constant in enum com.agenarisk.api.io.stub.Graphics.Field
visible - Enum constant in enum com.agenarisk.api.io.stub.NodeGraphics.Field
visible - Enum constant in enum com.agenarisk.api.io.stub.RiskTable.Question

W

weight - Enum constant in enum com.agenarisk.api.model.Observation.Field
width - Enum constant in enum com.agenarisk.api.io.stub.Graphics.WindowSettings
windowSettings - Enum constant in enum com.agenarisk.api.io.stub.Graphics.WindowSettings
WITH_ANCESTORS - Enum constant in enum com.agenarisk.api.model.Model.CalculationFlag: Calculate ancestors of the networks provided as well
withConfig(String) - Method in class com.agenarisk.api.tools.sensitivity.Sensitivity
withData(String) - Method in class com.agenarisk.api.tools.calculator.Calculator
withData(String) - Method in class com.agenarisk.api.tools.sensitivity.Sensitivity
withModel(String) - Method in class com.agenarisk.api.tools.calculator.Calculator
withModel(String) - Method in class com.agenarisk.api.tools.sensitivity.Sensitivity
wrapArrayElements(JSONArray, String) - Static method in class com.agenarisk.api.util.JSONUtils: Wraps all elements of the provided JSONArray into JSONObjects that each contains the element under the provided key.
writeCsv(List<List<Object>>, Path) - Static method in class com.agenarisk.api.util.CsvWriter: Writes the provided data to the specified path as a CSV file.
writeCsv(List<List<Object>>, Path, String) - Static method in class com.agenarisk.api.util.CsvWriter: Writes the provided data to the specified path as a CSV file.

X

x - Enum constant in enum com.agenarisk.api.io.stub.Graphics.WindowSettings
XMLAdapter - Class in com.agenarisk.api.io: Converts AgenaRisk Model JSON structure into an equivalent AgenaRisk Model XML structure and vice-versa.
XMLAdapter() - Constructor for class com.agenarisk.api.io.XMLAdapter
xmlToJson(String) - Static method in class com.agenarisk.api.io.XMLAdapter: Parses XML string to JSONObject and then formats the JSONObject to conform to AgenaRisk 10 JSON model format.

Y

y - Enum constant in enum com.agenarisk.api.io.stub.Graphics.WindowSettings

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